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Revision 27382 - Directory Listing
Modified Fri May 5 05:59:59 2017 UTC (5 months, 2 weeks ago) by nyulas
Added "activityWhenInjured" property (represented by the PC_AXIS_EC_ACTIVITY_WHEN_INJURED constant) to PC_AXES_PROPERTIES_LIST

Revision 27381 - Directory Listing
Modified Fri May 5 05:04:45 2017 UTC (5 months, 2 weeks ago) by nyulas
Added new constants and methods to retrieve them. The constants are to be used to refer to properties and classes dealing with coding notes and post-coordination along the external causes axes.

Revision 27380 - Directory Listing
Modified Thu Apr 27 07:14:11 2017 UTC (5 months, 4 weeks ago) by nyulas
Added temporary copy of icd_content_model containing tentative CM for post-coordination of external causes.
This will be merged into the ICD CM after has been reviewed/approved by Samson & WHO.

Revision 27375 - Directory Listing
Modified Thu Dec 8 15:15:11 2016 UTC (10 months, 2 weeks ago) by nyulas
- Added property codingNote with domain LinearizationSpecification and range CodingNoteTerm
- Documented the following properties to clarify distinction: codingHint, note and codingNote.

Revision 27373 - Directory Listing
Modified Thu Sep 15 07:54:02 2016 UTC (13 months, 1 week ago) by nyulas
Fixed build script and properties file

Revision 27372 - Directory Listing
Modified Thu Sep 15 07:29:48 2016 UTC (13 months, 1 week ago) by nyulas
New script for removing duplicate linearizations (which can be created at least by the import_ICECI script)

Revision 27371 - Directory Listing
Modified Thu Sep 15 01:39:28 2016 UTC (13 months, 1 week ago) by nyulas
Added http://who.int/icd#ICECI_ICECI class to content model.

Revision 27370 - Directory Listing
Modified Thu Sep 15 00:20:01 2016 UTC (13 months, 1 week ago) by nyulas
properties file for server config

Revision 27369 - Directory Listing
Modified Thu Sep 15 00:13:55 2016 UTC (13 months, 1 week ago) by nyulas
Reordered import spreadsheet numerically, instead of alphabetically

Revision 27368 - Directory Listing
Modified Thu Sep 15 00:12:59 2016 UTC (13 months, 1 week ago) by nyulas
Updated script with ordering

Revision 27367 - Directory Listing
Modified Wed Sep 14 06:36:53 2016 UTC (13 months, 1 week ago) by nyulas
Updated script with ordering

Revision 27366 - Directory Listing
Modified Thu Sep 1 13:27:30 2016 UTC (13 months, 3 weeks ago) by nyulas
Added value for iceciCode as well.

Revision 27365 - Directory Listing
Modified Thu Sep 1 13:02:17 2016 UTC (13 months, 3 weeks ago) by nyulas
Added classes (ICECIMetaClass and ExternalCauseDimensionReferenceTerm) and properties (relevantEntity and iceciCode) to support ICECI as a value set

Revision 27364 - Directory Listing
Modified Thu Sep 1 12:42:48 2016 UTC (13 months, 3 weeks ago) by nyulas
Updated instructions

Revision 27363 - Directory Listing
Modified Thu Sep 1 12:24:24 2016 UTC (13 months, 3 weeks ago) by nyulas
fixed classpath to refer to the proper jar file

Revision 27362 - Directory Listing
Modified Thu Sep 1 12:14:01 2016 UTC (13 months, 3 weeks ago) by nyulas
fixed reference to configuration file

Revision 27361 - Directory Listing
Modified Thu Sep 1 12:10:56 2016 UTC (13 months, 3 weeks ago) by nyulas
Initial commit of the import ICECI script

Revision 27360 - Directory Listing
Modified Thu Sep 1 12:10:00 2016 UTC (13 months, 3 weeks ago) by nyulas
Initial commit of the import ICECI script

Revision 27359 - Directory Listing
Modified Thu Sep 1 11:42:50 2016 UTC (13 months, 3 weeks ago) by nyulas
Initial commit of the import ICECI script

Revision 27356 - Directory Listing
Modified Mon Jun 6 08:19:33 2016 UTC (16 months, 2 weeks ago) by tudorache
testing the speed and mem reqs for java props

Revision 27350 - Directory Listing
Modified Sat Jun 4 00:50:11 2016 UTC (16 months, 2 weeks ago) by nyulas
Updated content model to support more post-coordination axes, such as associatedWith, as well as several burn qualifiers and fracture qualifiers.

Revision 27341 - Directory Listing
Modified Mon Dec 14 12:19:15 2015 UTC (22 months, 1 week ago) by nyulas
Updated command line  argument specification to be able to deal with varying number of arguments.

Revision 27340 - Directory Listing
Modified Mon Dec 14 12:09:45 2015 UTC (22 months, 1 week ago) by nyulas
Updated command line  argument specification to be able to deal with varying number of arguments.

Revision 27339 - Directory Listing
Modified Mon Dec 14 11:56:17 2015 UTC (22 months, 1 week ago) by nyulas
Improved error message.

Revision 27338 - Directory Listing
Modified Mon Dec 14 11:50:13 2015 UTC (22 months, 1 week ago) by nyulas
Fixed NullPointerException due to previously initializing too late.

Revision 27337 - Directory Listing
Modified Mon Dec 14 11:43:00 2015 UTC (22 months, 1 week ago) by nyulas
Fixed AddMultipleLinearization script to use the isPartOf and isGrouping options and added fix to deal with empty command line arguments.

Revision 27336 - Directory Listing
Modified Mon Dec 14 11:41:57 2015 UTC (22 months, 1 week ago) by nyulas
Fix to deal with empty command line arguments.

Revision 27335 - Directory Listing
Modified Mon Dec 14 11:35:45 2015 UTC (22 months, 1 week ago) by nyulas
Fixed AddMultipleLinearization script to use the isPartOf and isGrouping options

Revision 27334 - Directory Listing
Modified Mon Dec 14 10:37:54 2015 UTC (22 months, 1 week ago) by nyulas
Fixed conditions for counting (non-)option arguments.

Revision 27333 - Directory Listing
Modified Mon Dec 14 10:31:52 2015 UTC (22 months, 1 week ago) by nyulas
Fixed argument variable names.

Revision 27332 - Directory Listing
Modified Mon Dec 14 10:29:14 2015 UTC (22 months, 1 week ago) by nyulas
Fixed main class reference.

Revision 27331 - Directory Listing
Modified Mon Dec 14 10:18:02 2015 UTC (22 months, 1 week ago) by nyulas
Initial commit of the new AddMultipleLinearization script

Revision 27330 - Directory Listing
Modified Mon Dec 14 10:15:44 2015 UTC (22 months, 1 week ago) by nyulas
Added javadoc for class.

Revision 27329 - Directory Listing
Modified Mon Dec 14 10:11:47 2015 UTC (22 months, 1 week ago) by nyulas
Fixing argument count check. Goes together with previous commit.

Revision 27328 - Directory Listing
Modified Mon Dec 14 07:56:32 2015 UTC (22 months, 1 week ago) by nyulas
Fixing addmetaclass.jar, which contained bad content in the previous two revisions.

Revision 27327 - Directory Listing
Modified Mon Dec 14 02:47:08 2015 UTC (22 months, 1 week ago) by nyulas
Recreated addmetaclass.jar

Revision 27326 - Directory Listing
Modified Mon Dec 14 02:30:27 2015 UTC (22 months, 1 week ago) by nyulas
Updated "add metaclass" script, to take (multiple) top class argument

Revision 27324 - Directory Listing
Modified Sun Dec 13 23:58:33 2015 UTC (22 months, 1 week ago) by nyulas
- Added ICD11LinearizationView instance for ICD-O, and set its label, comment and sorting code (25).
- Added TermSection and LinearizationSection types to ChapterX

Revision 27323 - Directory Listing
Modified Sat Oct 17 08:20:31 2015 UTC (2 years ago) by nyulas
Committed changes that happened to icd_content_model between revision 27209 and 27244:
rev. 27227: Relabeled Foundation Component linearization view to "Extension Codes" and changed its sorting label from 20 to 0.
rev. 27240: Created DiagnosisConfirmedByReferenceTerm class and set range of diagnosisConfirmedBy and levelOfConsciousness properties.
rev. 27244: Added ChapterX class to Content Model
 

Revision 27276 - Directory Listing
Modified Tue Jan 13 23:17:06 2015 UTC (2 years, 9 months ago) by tudorache
Moving icd mturk to its own project so that it does not clutter the icd code

Revision 27271 - Directory Listing
Modified Wed Dec 31 22:49:40 2014 UTC (2 years, 9 months ago) by nyulas
Extended WHO-FIC content model and ICD_API_Example to easily retrieve information about post-coordination.

Revision 27270 - Directory Listing
Modified Thu Nov 13 21:24:20 2014 UTC (2 years, 11 months ago) by tudorache
public id for prod

Revision 27269 - Directory Listing
Modified Thu Nov 13 20:39:53 2014 UTC (2 years, 11 months ago) by tudorache
removed protege job - needs to be also on server

Revision 27268 - Directory Listing
Modified Thu Nov 13 20:38:25 2014 UTC (2 years, 11 months ago) by tudorache
fixes for prod

Revision 27267 - Directory Listing
Modified Thu Nov 13 20:07:39 2014 UTC (2 years, 11 months ago) by tudorache
removed protege job :(

Revision 27266 - Directory Listing
Modified Thu Nov 13 20:01:30 2014 UTC (2 years, 11 months ago) by tudorache
testclient api key

Revision 27265 - Directory Listing
Modified Thu Nov 13 18:48:30 2014 UTC (2 years, 11 months ago) by tudorache
testclient api key

Revision 27264 - Directory Listing
Modified Thu Nov 13 18:43:14 2014 UTC (2 years, 11 months ago) by tudorache
testclient api key

Revision 27263 - Directory Listing
Modified Wed Nov 12 22:14:25 2014 UTC (2 years, 11 months ago) by tudorache
script for remote public id

Revision 27262 - Directory Listing
Modified Wed Nov 12 22:09:34 2014 UTC (2 years, 11 months ago) by tudorache
add public id remote

Revision 27256 - Directory Listing
Modified Mon Oct 27 22:34:16 2014 UTC (2 years, 11 months ago) by nyulas
ICI ontologies

Revision 27246 - Directory Listing
Modified Sun Oct 12 21:33:10 2014 UTC (3 years ago) by nyulas
added script for etiology

Revision 27244 - Directory Listing
Modified Sun Oct 12 20:08:08 2014 UTC (3 years ago) by nyulas
Added ChapterX class to Content Model

Revision 27242 - Directory Listing
Modified Sun Oct 12 15:22:47 2014 UTC (3 years ago) by nyulas
updated the content model

Revision 27241 - Directory Listing
Modified Sun Oct 12 15:20:49 2014 UTC (3 years ago) by nyulas
updated the content model

Revision 27240 - Directory Listing
Modified Sun Oct 12 14:48:37 2014 UTC (3 years ago) by nyulas
Created DiagnosisConfirmedByReferenceTerm class and set range of diagnosisConfirmedBy and levelOfConsciousness properties.

Revision 27239 - Directory Listing
Modified Sun Oct 12 13:54:33 2014 UTC (3 years ago) by nyulas
added browser slot referencedValue to PostcoordRefterm

Revision 27235 - Directory Listing
Modified Sun Oct 12 09:58:59 2014 UTC (3 years ago) by nyulas
Extended ICD and WHO-FIC content model API with new methods to deal with scale value sets.

Revision 27232 - Directory Listing
Modified Sat Oct 11 17:55:00 2014 UTC (3 years ago) by tudorache
created import scripts for postcoord

Revision 27231 - Directory Listing
Modified Thu Oct 9 23:03:14 2014 UTC (3 years ago) by tudorache
Added constant and method to access "isTemplate" from the ICD Content Model and updated postcoordination value import scripts. 

Revision 27230 - Directory Listing
Modified Thu Oct 9 13:08:24 2014 UTC (3 years ago) by tudorache
created import scripts for postcoord

Revision 27229 - Directory Listing
Modified Thu Oct 9 11:53:53 2014 UTC (3 years ago) by tudorache
created import scripts for postcoord

Revision 27227 - Directory Listing
Modified Mon Oct 6 21:35:45 2014 UTC (3 years ago) by nyulas
Relabeled Foundation Component linearization view to "Extension Codes" and changed its sorting label from 20 to 0.

Revision 27224 - Directory Listing
Modified Mon Oct 6 20:28:44 2014 UTC (3 years ago) by tudorache
changed protege:isTemplate -> icd:isTemplate

Revision 27223 - Directory Listing
Modified Mon Oct 6 20:09:34 2014 UTC (3 years ago) by tudorache
added the isTemplate to the ref scale terms

Revision 27222 - Directory Listing
Modified Mon Oct 6 19:53:42 2014 UTC (3 years ago) by tudorache
refactored postcoord imports into another package

Revision 27215 - Directory Listing
Modified Mon Oct 6 01:37:28 2014 UTC (3 years ago) by nyulas
Clean up

Revision 27213 - Directory Listing
Modified Mon Oct 6 01:13:45 2014 UTC (3 years ago) by nyulas
Refactored code accessing the ICD Content Model to into a more general WHOFIC Content Model API (comprising the classes in the edu.stanford.bmir.whofic) , and two separate,more specialized APIs to access the ICD and the ICI content model. This change was key for building iCAT-ICI. 

Revision 27212 - Directory Listing
Modified Mon Oct 6 01:09:23 2014 UTC (3 years ago) by nyulas
Refactored code accessing the ICD Content Model to into a more general WHOFIC Content Model API (comprising the classes in the edu.stanford.bmir.whofic) , and two separate,more specialized APIs to access the ICD and the ICI content model. This change was key for building iCAT-ICI. 

Revision 27209 - Directory Listing
Modified Thu Oct 2 23:32:27 2014 UTC (3 years ago) by nyulas
fixed domain and range of externalReference property.

Revision 27208 - Directory Listing
Modified Wed Oct 1 20:38:49 2014 UTC (3 years ago) by tudorache
added script to import chemicals

Revision 27207 - Directory Listing
Modified Wed Oct 1 18:35:03 2014 UTC (3 years ago) by tudorache
fixed double class names

Revision 27206 - Directory Listing
Modified Wed Oct 1 09:22:23 2014 UTC (3 years ago) by tudorache
fixed compile errors

Revision 27205 - Directory Listing
Modified Wed Oct 1 09:18:52 2014 UTC (3 years ago) by tudorache
added more checks for import medicaments

Revision 27203 - Directory Listing
Modified Fri Sep 26 21:54:20 2014 UTC (3 years ago) by tudorache
script for importing medicaments

Revision 27202 - Directory Listing
Modified Fri Sep 26 21:49:30 2014 UTC (3 years ago) by tudorache
script for importing medicaments

Revision 27201 - Directory Listing
Modified Fri Sep 26 19:53:57 2014 UTC (3 years ago) by tudorache
renamed MedicationMetaClass -> MedicamentMetaClass

Revision 27200 - Directory Listing
Modified Tue Sep 16 06:44:55 2014 UTC (3 years, 1 month ago) by nyulas
- in previous commit:
Created class ExternalReferenceTerm as subclass of ReferenceTerm and superclass of SnomedReferenceTerm.
Created class ExternalReferenceSection as subclass of ICDSection and superclass of SnomedReferenceSection.

- in this commit:
Added icd:isTemplate as subproperty of protege:isTemplate, and moved the previous ICD specific domain of protege:isTemplate to icd:isTemplate.

Created class hierarchy under PostcoordinationScaleTerm
TemplateScaleTerm
    TemplateCourseScaleTerm
    TemplateSeverityScaleTerm
    TemplateTemporalPatternAndOnsetScaleTerm
and also made each Template[X]ScaleTerm subclass of [X]ScaleTerm.

TemplateScaleTerm is also subclass of "icd:isTemplate value true".

Revision 27199 - Directory Listing
Modified Thu Sep 11 23:04:19 2014 UTC (3 years, 1 month ago) by tudorache
updates with exernal ref metaclass, and empty definitions

Revision 27198 - Directory Listing
Modified Thu Sep 11 23:03:32 2014 UTC (3 years, 1 month ago) by tudorache
added external reference

Revision 27197 - Directory Listing
Modified Thu Sep 11 19:31:46 2014 UTC (3 years, 1 month ago) by tudorache
added ExternalReferenceSection, ExternalReferenceTerm, and renamed icd:isTemplate -> protege:isTemplate

Revision 27196 - Directory Listing
Modified Wed Sep 10 22:21:33 2014 UTC (3 years, 1 month ago) by tudorache
histopath.

Revision 27194 - Directory Listing
Modified Tue Sep 9 05:29:33 2014 UTC (3 years, 1 month ago) by nyulas
renamed ImportSpecificAnatomyLocation to ImportSpecificAnatomicLocation.

Revision 27193 - Directory Listing
Modified Mon Sep 8 22:18:55 2014 UTC (3 years, 1 month ago) by tudorache
added ref terms

Revision 27192 - Directory Listing
Modified Mon Sep 8 22:03:58 2014 UTC (3 years, 1 month ago) by tudorache
added ref terms

Revision 27191 - Directory Listing
Modified Fri Sep 5 23:58:41 2014 UTC (3 years, 1 month ago) by tudorache
added postcoord stuff

Revision 27190 - Directory Listing
Modified Fri Sep 5 23:58:14 2014 UTC (3 years, 1 month ago) by tudorache
updated script

Revision 27187 - Directory Listing
Modified Thu Sep 4 05:45:45 2014 UTC (3 years, 1 month ago) by nyulas
Updated ICDContentModelConstants to reflect changes in the topology and consciousness property hierarchy. 

Revision 27185 - Directory Listing
Modified Thu Sep 4 05:36:24 2014 UTC (3 years, 1 month ago) by tudorache
more scripts

Revision 27184 - Directory Listing
Modified Thu Sep 4 00:27:05 2014 UTC (3 years, 1 month ago) by tudorache
added two more scripts

Revision 27183 - Directory Listing
Modified Thu Aug 28 23:28:24 2014 UTC (3 years, 1 month ago) by tudorache
import etiology script

Revision 27182 - Directory Listing
Modified Wed Aug 27 23:24:59 2014 UTC (3 years, 1 month ago) by tudorache
added some more methods

Revision 27181 - Directory Listing
Modified Wed Aug 27 23:24:36 2014 UTC (3 years, 1 month ago) by tudorache
updated script

Revision 27180 - Directory Listing
Modified Tue Aug 26 22:33:35 2014 UTC (3 years, 1 month ago) by tudorache
work in progress

Revision 27179 - Directory Listing
Modified Thu Aug 14 07:19:41 2014 UTC (3 years, 2 months ago) by tudorache
updated post coord lin script

Revision 27178 - Directory Listing
Modified Thu Aug 14 07:03:18 2014 UTC (3 years, 2 months ago) by tudorache
created the add post coord linearization script

Revision 27177 - Directory Listing
Modified Thu Aug 14 06:42:39 2014 UTC (3 years, 2 months ago) by tudorache
updated addmetaclass.jar

Revision 27176 - Directory Listing
Modified Thu Aug 14 06:09:02 2014 UTC (3 years, 2 months ago) by tudorache
updated addmetaclass.jar

Revision 27175 - Directory Listing
Modified Thu Aug 14 05:54:28 2014 UTC (3 years, 2 months ago) by tudorache
updated addmetaclass.jar

Revision 27174 - Directory Listing
Modified Thu Aug 14 05:49:11 2014 UTC (3 years, 2 months ago) by tudorache
add metaclass script

Revision 27173 - Directory Listing
Modified Thu Aug 14 01:29:58 2014 UTC (3 years, 2 months ago) by nyulas
Fixed topology sub-properties and their value sets in Content Model.
Instead of superficialOrDeep and externalOrInternal we have now "relational" (which is a more general term that includes the previous distinctions) and "regional".

Revision 27172 - Directory Listing
Modified Thu Aug 14 00:58:06 2014 UTC (3 years, 2 months ago) by nyulas
Changed content model to be able to represent post-coordination on consciousness with a better accuracy.

Revision 27171 - Directory Listing
Modified Tue Jul 22 23:57:59 2014 UTC (3 years, 3 months ago) by nyulas
Initial commit of code for pre-coordination support

Revision 27165 - Directory Listing
Modified Thu May 29 02:21:46 2014 UTC (3 years, 4 months ago) by nyulas
Committing ChAO ontology for the database version of ICD content model, just to be up to date with revision 27164.

Revision 27164 - Directory Listing
Modified Thu May 29 01:36:00 2014 UTC (3 years, 4 months ago) by nyulas
- Created subclasses of TopologyReferenceTerm (DistributionReferenceTerm, LateralityReferenceTerm, SuperficialOrDeepReferenceTerm, etc.) and set the range of the subproperties of "topology" property (distribution, laterality, etc.) to be the apropriate reference term class.
- Added FoundationComponent linearization view.

Revision 27137 - Directory Listing
Modified Sat Mar 22 23:02:44 2014 UTC (3 years, 7 months ago) by nyulas
added reference to ChAO libraries in build.xml

Revision 27136 - Directory Listing
Modified Sat Mar 22 22:54:24 2014 UTC (3 years, 7 months ago) by tudorache
uncommented log line for recreating index for parent. if this happens on icat server, we should know, because this should only happen when creating new classes with children. if not, it indicates a corruption in the internal indexes for sibling sorting

Revision 27135 - Directory Listing
Modified Sat Mar 22 22:51:36 2014 UTC (3 years, 7 months ago) by nyulas
Fixed arguments to be ready to import the real definitions for the neoplasm chapter 

Revision 27134 - Directory Listing
Modified Sat Mar 22 22:20:21 2014 UTC (3 years, 7 months ago) by nyulas
Modified script to record the import of the definitions in the change history.

Revision 27133 - Directory Listing
Modified Sat Mar 22 20:43:39 2014 UTC (3 years, 7 months ago) by nyulas
Added CSV file for importing neoplasm definitions.

Revision 27132 - Directory Listing
Modified Sat Mar 22 20:37:55 2014 UTC (3 years, 7 months ago) by nyulas
Added general script for importing definition with comments attached.

Revision 27130 - Directory Listing
Modified Sat Mar 22 05:31:52 2014 UTC (3 years, 7 months ago) by tudorache
- fix for a very weird null pointer exception of the logger.. using isLoggable now.


Revision 27127 - Directory Listing
Modified Fri Mar 21 18:57:21 2014 UTC (3 years, 7 months ago) by tudorache
if sibling reordering is not supported revert to old sorting way in getOrderedChildren

Revision 27126 - Directory Listing
Modified Fri Mar 14 23:54:07 2014 UTC (3 years, 7 months ago) by nyulas
Added configuration files and fixed content of Excel file to prepare for running the script on server

Revision 27125 - Directory Listing
Modified Fri Mar 14 22:37:09 2014 UTC (3 years, 7 months ago) by nyulas
Changed properties file to add Specialty_Adaptation_Ophthalmology linearization.

Revision 27124 - Directory Listing
Modified Fri Mar 14 22:28:39 2014 UTC (3 years, 7 months ago) by nyulas
Added support for updating ophthalmology linearization

Revision 27123 - Directory Listing
Modified Fri Mar 14 22:21:37 2014 UTC (3 years, 7 months ago) by nyulas
Added support for updating ophthalmology linearization

Revision 27122 - Directory Listing
Modified Fri Mar 14 22:19:50 2014 UTC (3 years, 7 months ago) by nyulas
added files for updating ophtalmology linearizations.

Revision 27121 - Directory Listing
Modified Fri Mar 14 22:17:14 2014 UTC (3 years, 7 months ago) by nyulas
Moved files previously archived under import_linearizations_from_xls due to SVN misconfiguration to their own directory under update_linearizations.
The script in version can update ophthalmology linearization as well.

Revision 27120 - Directory Listing
Modified Fri Mar 14 22:09:41 2014 UTC (3 years, 7 months ago) by nyulas
Separated out files that belong to update_linearizations script and reverted build.xml to revision 19626, which was the last one that was invoking the import linearizations and biological sex.

Revision 27119 - Directory Listing
Modified Fri Mar 14 21:00:40 2014 UTC (3 years, 7 months ago) by nyulas
Added linearization view for ophthalmology linearization.

Revision 26960 - Directory Listing
Modified Wed Jan 22 18:55:26 2014 UTC (3 years, 9 months ago) by tudorache
fixed a null pointer with the logger

Revision 26959 - Directory Listing
Modified Tue Jan 21 22:41:54 2014 UTC (3 years, 9 months ago) by tudorache
temporary commit: taking out a log file until we run the script, after we should renabled it in recreateIndex

Revision 26958 - Directory Listing
Modified Tue Jan 21 22:39:06 2014 UTC (3 years, 9 months ago) by tudorache
script for creating sibling index for all icd cats

Revision 26957 - Directory Listing
Modified Tue Jan 21 22:35:04 2014 UTC (3 years, 9 months ago) by tudorache
script for creating sibling index for all icd cats

Revision 26956 - Directory Listing
Modified Tue Jan 21 22:33:23 2014 UTC (3 years, 9 months ago) by tudorache
using its own log

Revision 26955 - Directory Listing
Modified Tue Jan 21 22:31:31 2014 UTC (3 years, 9 months ago) by tudorache
changed logging for checking index

Revision 26952 - Directory Listing
Modified Sat Jan 18 01:30:36 2014 UTC (3 years, 9 months ago) by nyulas
Protege archive of the content model containing Tania's changes committed in the previous revision.

Revision 26950 - Directory Listing
Modified Fri Jan 17 22:59:31 2014 UTC (3 years, 9 months ago) by tudorache
changes for sibling reordering

Revision 26949 - Directory Listing
Modified Fri Jan 17 22:52:51 2014 UTC (3 years, 9 months ago) by tudorache
deleted change_log.txt because it was outdated

Revision 26948 - Directory Listing
Modified Fri Jan 17 22:52:04 2014 UTC (3 years, 9 months ago) by tudorache
Added class and 2 properties for the sibling index.
The children index is stored as instances of ChildOrder for each parent through the property childrenOrder. A ChildIndex instance has a property orderedChild that points to the child, and orderedChildIndex that contains the int value of that particular child.

Here is the modeling:
DefinitionSection -- childrenOrder  ---> ChildOrder ---orderedChild ---> DefinitionSection
                                                                                                 --- orderedChildIndex ---> xsd:int
                                                                                                 
                                                                                                 

Revision 26942 - Directory Listing
Modified Tue Jan 14 00:23:16 2014 UTC (3 years, 9 months ago) by nyulas
Fixed PostCoordinationGrid widget to activate the right scale selection widget when iCAT is configured correctly.

Revision 26927 - Directory Listing
Modified Tue Dec 17 06:35:23 2013 UTC (3 years, 10 months ago) by nyulas
Adding option for switching on/off low and high resource primary care linearizations. This version does NOT compile as it is.

Revision 26926 - Directory Listing
Modified Tue Dec 10 23:00:00 2013 UTC (3 years, 10 months ago) by tudorache
not ready  - intermediary commit to work on a different computer

Revision 26917 - Directory Listing
Modified Tue Dec 3 23:11:50 2013 UTC (3 years, 10 months ago) by tudorache
another intermediary commit for this class, not ready for prime time yet

Revision 26915 - Directory Listing
Modified Mon Dec 2 23:10:02 2013 UTC (3 years, 10 months ago) by tudorache
intermediary commit for sibling reordering, not ready yet, not in use yet

Revision 26914 - Directory Listing
Modified Fri Nov 22 22:00:41 2013 UTC (3 years, 11 months ago) by tudorache
minor - added comment

Revision 26913 - Directory Listing
Modified Fri Nov 22 21:10:32 2013 UTC (3 years, 11 months ago) by tudorache
a simple script that simplifies ICF with ICD content model to an OWL file with just a class hierarchy and annotations. 

Revision 26907 - Directory Listing
Modified Thu Nov 21 05:51:43 2013 UTC (3 years, 11 months ago) by yunlou
add readme file

Revision 26906 - Directory Listing
Modified Tue Nov 12 23:54:00 2013 UTC (3 years, 11 months ago) by yunlou
add lib folder

Revision 26901 - Directory Listing
Modified Fri Nov 8 19:52:48 2013 UTC (3 years, 11 months ago) by nyulas
Added support for controlling how residuals will be generated

Revision 26895 - Directory Listing
Modified Mon Nov 4 23:11:14 2013 UTC (3 years, 11 months ago) by nyulas
This subproject contains Vincent Lou's work on acquiring sanctioning rules for ICD using the Amazon Mechanical Turk crowdsourcing platform.

Revision 26894 - Directory Listing
Modified Mon Nov 4 20:07:27 2013 UTC (3 years, 11 months ago) by yunlou
upload the project for crowdsourcing sanctioning rules for ICD 11

Revision 26893 - Directory Listing
Modified Mon Nov 4 20:05:24 2013 UTC (3 years, 11 months ago) by yunlou
Share project "turk" into "https://smi-protege.stanford.edu/repos/protege/icd"

Revision 26891 - Directory Listing
Modified Mon Oct 7 19:20:08 2013 UTC (4 years ago) by tudorache
no morbidity from robert

Revision 26890 - Directory Listing
Modified Fri Aug 30 22:06:07 2013 UTC (4 years, 1 month ago) by nyulas


Revision 26889 - Directory Listing
Modified Fri Aug 30 19:50:47 2013 UTC (4 years, 1 month ago) by nyulas
Script for updating linearizations

Revision 26888 - Directory Listing
Modified Fri Aug 30 18:45:04 2013 UTC (4 years, 1 month ago) by tudorache
adding the linearization also to ICDCategroy

Revision 26887 - Directory Listing
Modified Fri Aug 30 18:44:33 2013 UTC (4 years, 1 month ago) by tudorache
adding the linearization also to ICDCategroy

Revision 26883 - Directory Listing
Modified Wed Aug 21 21:55:33 2013 UTC (4 years, 2 months ago) by tudorache
added methods for reordering siblings - work in progress not ready yet

Revision 26878 - Directory Listing
Modified Tue Aug 13 00:50:37 2013 UTC (4 years, 2 months ago) by nyulas
- Created PostcoordinationCourseScaleTerm and PostcoordinationTemporalPatternAndOnsetScaleTerm subclasses of PostcoordinationScaleTerm.
- Changed class expression 
"hasScaleValue only SeverityReferenceTerm" to "hasScaleValue some SeverityReferenceTerm"
in the definition of PostcoordinationSeverityScaleTerm.

Revision 26751 - Directory Listing
Modified Fri Jun 28 20:44:44 2013 UTC (4 years, 3 months ago) by tudorache


Revision 26750 - Directory Listing
Modified Fri Jun 28 20:43:08 2013 UTC (4 years, 3 months ago) by tudorache
init icdContentModel

Revision 26749 - Directory Listing
Modified Fri Jun 28 20:42:47 2013 UTC (4 years, 3 months ago) by tudorache
init icdContentModel

Revision 26748 - Directory Listing
Modified Fri Jun 28 19:19:02 2013 UTC (4 years, 3 months ago) by tudorache
new url

Revision 26747 - Directory Listing
Modified Fri Jun 28 19:18:41 2013 UTC (4 years, 3 months ago) by tudorache
new url

Revision 26746 - Directory Listing
Modified Fri Jun 28 18:58:26 2013 UTC (4 years, 3 months ago) by tudorache
added the caller system name arg

Revision 26745 - Directory Listing
Modified Fri Jun 28 18:58:01 2013 UTC (4 years, 3 months ago) by tudorache
added the caller system name arg

Revision 26739 - Directory Listing
Modified Thu Jun 27 18:15:48 2013 UTC (4 years, 3 months ago) by tudorache
script folder for adding a generic linearization

Revision 26738 - Directory Listing
Modified Thu Jun 27 18:08:16 2013 UTC (4 years, 3 months ago) by tudorache
new jar

Revision 26737 - Directory Listing
Modified Thu Jun 27 18:05:08 2013 UTC (4 years, 3 months ago) by tudorache
print also the total no of classes for which we added the public id

Revision 26736 - Directory Listing
Modified Thu Jun 27 18:01:32 2013 UTC (4 years, 3 months ago) by tudorache
generic script to add a new linearization

Revision 26735 - Directory Listing
Modified Thu Jun 27 17:21:47 2013 UTC (4 years, 3 months ago) by tudorache
changed the script to add the public id only if it doesn't exist already

Revision 26692 - Directory Listing
Modified Thu Jun 13 06:14:56 2013 UTC (4 years, 4 months ago) by nyulas
Clean-up

Revision 26691 - Directory Listing
Modified Thu Jun 13 06:13:14 2013 UTC (4 years, 4 months ago) by nyulas
Added support for post-coordination.

Revision 26688 - Directory Listing
Modified Fri Jun 7 22:02:23 2013 UTC (4 years, 4 months ago) by nyulas
Renamed PatternActivityClinicalStatusReferenceTerm class to TemporalPatternAndOnsetReferenceTerm.

Revision 26687 - Directory Listing
Modified Fri Jun 7 21:29:05 2013 UTC (4 years, 4 months ago) by nyulas
Renamed patternActivityClinicalStatus property to temporalPatternAndOnset.

Revision 26630 - Directory Listing
Modified Thu May 30 01:27:18 2013 UTC (4 years, 4 months ago) by nyulas
Added requiredPostcoordinationAxisProperty property.

Revision 26593 - Directory Listing
Modified Wed May 15 17:27:26 2013 UTC (4 years, 5 months ago) by tudorache
new version

Revision 26553 - Directory Listing
Modified Fri May 3 23:36:24 2013 UTC (4 years, 5 months ago) by nyulas
Added script for retirering residual classes from ICD11

Revision 26394 - Directory Listing
Modified Tue Apr 16 20:22:26 2013 UTC (4 years, 6 months ago) by nyulas
ICD content model changes to support publicId and initial version of post-coordination.

Revision 26180 - Directory Listing
Modified Fri Mar 15 06:59:07 2013 UTC (4 years, 7 months ago) by tudorache
fix for url in custom ictm script

Revision 26179 - Directory Listing
Modified Fri Mar 15 06:40:14 2013 UTC (4 years, 7 months ago) by tudorache
this is the jar for ICTM

Revision 26133 - Directory Listing
Modified Thu Mar 7 05:51:36 2013 UTC (4 years, 7 months ago) by tudorache
- the main method takes now an argument - the path to the icd_umbrella.pprj file
- added methods for the publicId

Revision 26132 - Directory Listing
Modified Thu Mar 7 05:42:24 2013 UTC (4 years, 7 months ago) by tudorache
removed unneeded stuff

Revision 26130 - Directory Listing
Modified Thu Mar 7 03:59:28 2013 UTC (4 years, 7 months ago) by tudorache


Revision 26129 - Directory Listing
Modified Thu Mar 7 03:57:50 2013 UTC (4 years, 7 months ago) by tudorache
script to add the public id to all ICD categories

Revision 26120 - Directory Listing
Modified Wed Mar 6 22:44:57 2013 UTC (4 years, 7 months ago) by tudorache
fix class

Revision 26119 - Directory Listing
Modified Wed Mar 6 22:37:51 2013 UTC (4 years, 7 months ago) by tudorache
minor fix

Revision 26118 - Directory Listing
Modified Wed Mar 6 22:35:53 2013 UTC (4 years, 7 months ago) by tudorache
script for importing public id

Revision 26107 - Directory Listing
Modified Tue Mar 5 22:32:04 2013 UTC (4 years, 7 months ago) by tudorache
added public ID methods

Revision 25955 - Directory Listing
Modified Tue Jan 15 22:49:38 2013 UTC (4 years, 9 months ago) by nyulas
Updated to the latest CM dump from iCAT production as of beginning of 2013, and prior to the modeling of post-coordination.
This version contains a few changes compared to the previous version, which are related to exclusion types (now there are 3 exclusion types defined and all of them user friendly labels)

Revision 25936 - Directory Listing
Modified Wed Dec 19 09:44:10 2012 UTC (4 years, 10 months ago) by nyulas
some more projects files, useful for testing

Revision 25935 - Directory Listing
Modified Wed Dec 19 09:41:29 2012 UTC (4 years, 10 months ago) by nyulas
This is a belated commit of a utility class that was created in late February 2012 to export ICD content filtered on specific conditions. The creation of this utility class was prompted by a request from WHO (more specifically, Sara) to export classes that have no TAGs assigned, with information on who created each of those classes. This class is generic and one could implement different filters to work with, however, currently it has only the "NewICD11CategoryAndHasNoPrimaryTAGAssigned" filter implemented, which was relevant for this export.
Although this class provides the intended functionality, in the end we have created the exported content with a SQL script called "get_created_and_assigned_script.sql", which is able to extract the desired information quicker by directly querying the ICD database backend.


Revision 25873 - Directory Listing
Modified Sat Nov 3 04:24:36 2012 UTC (4 years, 11 months ago) by nyulas
Modified changed log message to ease filtering.

Revision 25872 - Directory Listing
Modified Thu Nov 1 07:26:05 2012 UTC (4 years, 11 months ago) by nyulas
Added orphanet id and details in the change log.

Revision 25871 - Directory Listing
Modified Thu Nov 1 06:26:29 2012 UTC (4 years, 11 months ago) by nyulas
added some more arguments, connects to server

Revision 25870 - Directory Listing
Modified Thu Nov 1 06:12:54 2012 UTC (4 years, 11 months ago) by nyulas
Added script for running Import rare diseases definition.

Revision 25869 - Directory Listing
Modified Thu Nov 1 05:47:05 2012 UTC (4 years, 11 months ago) by nyulas
Added script for automatic import of Rare Diseases definitions.

Revision 24929 - Directory Listing
Modified Wed Apr 4 21:40:52 2012 UTC (5 years, 6 months ago) by tredmond
set the context class loader before calling the BSFManager constructor.


Revision 24869 - Directory Listing
Modified Wed Mar 28 19:16:27 2012 UTC (5 years, 6 months ago) by nyulas
updated jar

Revision 24868 - Directory Listing
Modified Wed Mar 28 18:57:42 2012 UTC (5 years, 6 months ago) by nyulas
Added new csv file from 03.21, and set configuration to use it

Revision 24749 - Directory Listing
Modified Tue Mar 20 06:24:52 2012 UTC (5 years, 7 months ago) by nyulas
Fixed ChAO messages

Revision 24743 - Directory Listing
Modified Tue Mar 20 00:30:41 2012 UTC (5 years, 7 months ago) by nyulas
Minor: updated excel import properties file and its template

Revision 24741 - Directory Listing
Modified Tue Mar 20 00:18:39 2012 UTC (5 years, 7 months ago) by nyulas
Consolidated change log entries: one entry per category, with information about all the terms that have been changed.

Revision 24719 - Directory Listing
Modified Sat Mar 17 07:41:31 2012 UTC (5 years, 7 months ago) by nyulas
Updated import_TAGs_and_status to deal with the second batch import.
Plus, guarded against potential NPE.

Revision 24718 - Directory Listing
Modified Sat Mar 17 01:16:57 2012 UTC (5 years, 7 months ago) by nyulas
Updated jar file that contains the fixes that were suppose to be included in the previous commit.

Revision 24717 - Directory Listing
Modified Fri Mar 16 23:19:32 2012 UTC (5 years, 7 months ago) by nyulas
- Fixed NPE in the writeChangesToChao
- Changed ordering of category info, so that synonyms come before narrower terms and inclusion terms before non-inclusion terms
- Added better control over the quantity of the output by introducing a DEBUG flag
- Fixed formatting of output strings and change log messages

Revision 24714 - Directory Listing
Modified Fri Mar 16 07:08:00 2012 UTC (5 years, 7 months ago) by nyulas
Added labels to newly created terms, plus printing some progress indicator

Revision 24713 - Directory Listing
Modified Fri Mar 16 07:06:55 2012 UTC (5 years, 7 months ago) by nyulas
Added labels to newly created terms, plus printing some progress indicator

Revision 24669 - Directory Listing
Modified Fri Mar 9 09:16:48 2012 UTC (5 years, 7 months ago) by nyulas
Increased heap size to ~4GB

Revision 24668 - Directory Listing
Modified Fri Mar 9 08:42:02 2012 UTC (5 years, 7 months ago) by nyulas
Fully featured version of the index term migration script.

Revision 24667 - Directory Listing
Modified Fri Mar 9 08:25:42 2012 UTC (5 years, 7 months ago) by nyulas
Initial commit of the Index Term migration script

Revision 24666 - Directory Listing
Modified Fri Mar 9 07:59:24 2012 UTC (5 years, 7 months ago) by nyulas
Still temporary jar with no exclusion migration, but with a NPE bug (hopefully) fixed.

Revision 24665 - Directory Listing
Modified Fri Mar 9 07:54:45 2012 UTC (5 years, 7 months ago) by nyulas
New (temporary test) jar, with test_run mode set to FALSE, and no exclusion migration

Revision 24664 - Directory Listing
Modified Fri Mar 9 07:39:44 2012 UTC (5 years, 7 months ago) by nyulas
Added methods for dealing with base index, base inclusion and base exclusion terms

Revision 24663 - Directory Listing
Modified Fri Mar 9 07:32:03 2012 UTC (5 years, 7 months ago) by nyulas
Initial commit of the Index Term migration script

Revision 24151 - Directory Listing
Modified Fri Jan 20 01:00:25 2012 UTC (5 years, 9 months ago) by tudorache
added missing jars needed to compile the export icd

Revision 24122 - Directory Listing
Modified Sat Jan 14 07:24:55 2012 UTC (5 years, 9 months ago) by nyulas
Late commits of some ICD scripts

Revision 23830 - Directory Listing
Modified Fri Sep 30 08:20:49 2011 UTC (6 years ago) by nyulas
Added progress indicator and fixed some minor typo. Fixed jardesc, and recreated JAR file. Deleted old Excel resource to avoid confusion.

Revision 23829 - Directory Listing
Modified Fri Sep 30 08:17:45 2011 UTC (6 years ago) by nyulas
For the history

Revision 23828 - Directory Listing
Modified Fri Sep 30 06:37:00 2011 UTC (6 years ago) by nyulas
Deleted AddHistoricLinearizations which was a previously uncommitted change part of "Renamed and cleaned up the script for adding the tabulation list linearizations"

Revision 23826 - Directory Listing
Modified Fri Sep 30 05:35:34 2011 UTC (6 years ago) by nyulas
Shortened label of Primary Care High Resource Setting and Low Resource Setting LinearizationViews.

Revision 23825 - Directory Listing
Modified Fri Sep 30 05:32:43 2011 UTC (6 years ago) by nyulas
Shortened label of Primary Care High Resource Setting and Low Resource Setting LinearizationViews.

Revision 23824 - Directory Listing
Modified Fri Sep 30 03:02:25 2011 UTC (6 years ago) by nyulas
Added two new utility method for retrieving historic linearization specifications property values

Revision 23822 - Directory Listing
Modified Fri Sep 30 02:31:04 2011 UTC (6 years ago) by nyulas
Added build file, configuration files and jar file for easier running of the "add historic linearizations" script.

Revision 23821 - Directory Listing
Modified Fri Sep 30 01:46:51 2011 UTC (6 years ago) by nyulas
Added Excel files

Revision 23820 - Directory Listing
Modified Fri Sep 30 01:46:11 2011 UTC (6 years ago) by nyulas
Deleted the two Excel files that did not belong here.

Revision 23819 - Directory Listing
Modified Fri Sep 30 01:46:03 2011 UTC (6 years ago) by tudorache
- added method to getIsObsolete prop
- fix for creating the linearizations when creating a new category
- fix for default grouping flag

Revision 23818 - Directory Listing
Modified Fri Sep 30 01:43:57 2011 UTC (6 years ago) by tudorache
- added method to getIsObsolete prop
- fix for creating the linearizations when creating a new category

Revision 23817 - Directory Listing
Modified Fri Sep 30 01:43:22 2011 UTC (6 years ago) by tudorache
added the isObsolte property

Revision 23816 - Directory Listing
Modified Fri Sep 30 01:41:40 2011 UTC (6 years ago) by nyulas
Renamed and cleaned up the script for adding the tabulation list linearizations, and created a new script "AddMissingLinearizations" that can add arbitrary linearizations (both ICD-11 and ICD10) to all ICD categories.

Revision 23796 - Directory Listing
Modified Thu Sep 29 08:47:30 2011 UTC (6 years ago) by nyulas
Initial check-in of AddHistoricLinearizations import script

Revision 23792 - Directory Listing
Modified Thu Sep 29 01:45:28 2011 UTC (6 years ago) by tudorache
- added code to create the linearization instances from the parent classes at the creation of a new ICD category
- create also linearization specifications for the historic linearizations (ICD-10 linearizations, and ICD-10 tabulation lists)

Revision 23791 - Directory Listing
Modified Thu Sep 29 00:59:27 2011 UTC (6 years ago) by nyulas
updated "CM Changes" doc to reflect latest changes

Revision 23790 - Directory Listing
Modified Thu Sep 29 00:34:10 2011 UTC (6 years ago) by nyulas
Created new subclass of "LinearizationView" called "ICTMLinearizationView" and moved all the local (ICTM specific) LinearizationView instances under the new subclass.

Revision 23789 - Directory Listing
Modified Thu Sep 29 00:31:34 2011 UTC (6 years ago) by nyulas
- Added LinearizationView instance for Occupational Health;

- Added a subclass of LinearizationSpecification called HistoricLinearizationSpecification 
- Added historicLinearization property and set its domain to LinearizationSection and its range to HistoricLinearizationSpecification.
- Added sub-properties of the historicLinearization property (icd10Linearization and icd10TabulationList), to allow representation of linearizations that encode ICD-10 tabulation lists and ICD-10 (or ICD-9) national modifications.
- Added more LinearizationView instances:
    - 6 for the ICD-10 Special Tabulation Lists (M1, M2, M3, M4, Mb, and VA).
    - 6 for historic ICD-10 linearizations (
    - 2 new ICD11 linearizations by splitting the Primary Care linearizations into high and low resource settings

- Added a boolean datatype property called "isObsolete", with the domain "DefinitionSection"

- Created 3 subclasses of "LinearizationView" ("ICD11LinearizationView", "ICD10LinearizationView", and "ICD10TabulationListView") and reorganized its instances into these subclasses. Removed class definition axiom from "LinearizationView".

Revision 23788 - Directory Listing
Modified Thu Sep 29 00:28:18 2011 UTC (6 years ago) by nyulas
- Added a subclass of LinearizationSpecification called HistoricLinearizationSpecification 
- Added historicLinearization property and set its domain to LinearizationSection and its range to HistoricLinearizationSpecification.
- Added sub-properties of the historicLinearization property (icd10Linearization and icd10TabulationList), to allow representation of linearizations that encode ICD-10 tabulation lists and ICD-10 (or ICD-9) national modifications.
- Added more LinearizationView instances:
    - 6 for the ICD-10 Special Tabulation Lists (M1, M2, M3, M4, Mb, and VA).
    - 6 for historic ICD-10 linearizations (
    - 2 new ICD11 linearizations by splitting the Primary Care linearizations into high and low resource settings

- Added a boolean datatype property called "isObsolete", with the domain "DefinitionSection"

- Created 3 subclasses of "LinearizationView" ("ICD11LinearizationView", "ICD10LinearizationView", and "ICD10TabulationListView") and reorganized its instances into these subclasses. Removed class definition axiom from "LinearizationView".

Revision 23761 - Directory Listing
Modified Tue Sep 20 06:58:03 2011 UTC (6 years, 1 month ago) by nyulas
Previous version did not contain all the information that it promised.

Revision 23760 - Directory Listing
Modified Tue Sep 20 06:34:12 2011 UTC (6 years, 1 month ago) by nyulas
Added the alternativeLabel property, and added rdfs:comment to the isGrouping property (which, itself, was added before the Jul 28, 2011 release, although was not documented)

Revision 23759 - Directory Listing
Modified Tue Sep 20 06:17:06 2011 UTC (6 years, 1 month ago) by nyulas
Adding some older archives to the SVN.

Revision 23587 - Directory Listing
Modified Wed Aug 10 17:24:47 2011 UTC (6 years, 2 months ago) by nyulas
Some code for assessing the successfulness the InitIsGroupings script

Revision 23584 - Directory Listing
Modified Tue Aug 9 00:27:19 2011 UTC (6 years, 2 months ago) by tudorache
updated jar

Revision 23583 - Directory Listing
Modified Tue Aug 9 00:26:53 2011 UTC (6 years, 2 months ago) by tudorache
fix for npe

Revision 23581 - Directory Listing
Modified Mon Aug 8 21:50:56 2011 UTC (6 years, 2 months ago) by tudorache
added changes jars in the classpath

Revision 23580 - Directory Listing
Modified Mon Aug 8 04:07:26 2011 UTC (6 years, 2 months ago) by tudorache
updated jar

Revision 23579 - Directory Listing
Modified Mon Aug 8 04:05:15 2011 UTC (6 years, 2 months ago) by tudorache
added change tracking

Revision 23578 - Directory Listing
Modified Mon Aug 8 01:34:58 2011 UTC (6 years, 2 months ago) by nyulas
Changed the way we calculate the list of invalid/unfound categories in the CSV file

Revision 23577 - Directory Listing
Modified Mon Aug 8 00:35:45 2011 UTC (6 years, 2 months ago) by nyulas
Added ImportsUtil to the jar

Revision 23576 - Directory Listing
Modified Mon Aug 8 00:30:18 2011 UTC (6 years, 2 months ago) by tudorache
fixed path

Revision 23575 - Directory Listing
Modified Mon Aug 8 00:19:55 2011 UTC (6 years, 2 months ago) by nyulas
Modified init_is_grouping to read ontology from a pprj file, instead of connecting directly to a running Protege server.

Revision 23573 - Directory Listing
Modified Fri Aug 5 22:47:11 2011 UTC (6 years, 2 months ago) by tudorache
updated jar

Revision 23572 - Directory Listing
Modified Fri Aug 5 22:45:37 2011 UTC (6 years, 2 months ago) by tudorache
attach the change to the category

Revision 23571 - Directory Listing
Modified Fri Aug 5 22:15:47 2011 UTC (6 years, 2 months ago) by nyulas
Added access to isGrouping property through the ICDContentModel

Revision 23570 - Directory Listing
Modified Fri Aug 5 22:04:28 2011 UTC (6 years, 2 months ago) by nyulas
Added more user friendly messages to explain connection status.

Revision 23569 - Directory Listing
Modified Fri Aug 5 22:01:03 2011 UTC (6 years, 2 months ago) by tudorache
moved libs here

Revision 23568 - Directory Listing
Modified Fri Aug 5 22:00:38 2011 UTC (6 years, 2 months ago) by tudorache
moved to lib

Revision 23567 - Directory Listing
Modified Fri Aug 5 21:59:33 2011 UTC (6 years, 2 months ago) by tudorache
build file

Revision 23566 - Directory Listing
Modified Fri Aug 5 21:46:54 2011 UTC (6 years, 2 months ago) by nyulas
Removed the lines that disables event generation. Created JAR file

Revision 23565 - Directory Listing
Modified Fri Aug 5 21:30:16 2011 UTC (6 years, 2 months ago) by nyulas
Added script for importing initial values for the "is Grouping" property.

Revision 23553 - Directory Listing
Modified Thu Aug 4 04:47:32 2011 UTC (6 years, 2 months ago) by nyulas
Late commit: Changed sheet name to match the new Excel sheet

Revision 23436 - Directory Listing
Modified Wed Jul 27 19:58:01 2011 UTC (6 years, 2 months ago) by tudorache
added example for the display status and tag responsability

Revision 23435 - Directory Listing
Modified Wed Jul 27 19:57:09 2011 UTC (6 years, 2 months ago) by tudorache
added method to get the display status

Revision 23429 - Directory Listing
Modified Wed Jul 27 07:23:07 2011 UTC (6 years, 2 months ago) by nyulas
Fixed getting the right Excel file location for the ICD content export.

Revision 23428 - Directory Listing
Modified Wed Jul 27 07:19:03 2011 UTC (6 years, 2 months ago) by nyulas
Updated ICDContentModel to conform to the new CM modeling index, inclusion and exclusion in a different way.

Revision 23413 - Directory Listing
Modified Wed Jul 27 05:08:28 2011 UTC (6 years, 3 months ago) by tudorache
added the display status instances

Revision 23384 - Directory Listing
Modified Tue Jul 26 01:49:21 2011 UTC (6 years, 3 months ago) by nyulas
In addition to previous commit we also renamed "HBP" to "HPB". WHO needs to confirm that this is correct.

Revision 23382 - Directory Listing
Modified Tue Jul 26 01:37:27 2011 UTC (6 years, 3 months ago) by nyulas
Fixed the interpretation of the "HBP" to "http://who.int/icd#TAG_IM_Hepatology_and_Pancreatobiliary".

Revision 23381 - Directory Listing
Modified Tue Jul 26 00:56:26 2011 UTC (6 years, 3 months ago) by nyulas
fixed some configurations

Revision 23347 - Directory Listing
Modified Fri Jul 22 08:28:11 2011 UTC (6 years, 3 months ago) by nyulas
Reverting to revision 23011

Revision 23346 - Directory Listing
Modified Fri Jul 22 00:08:46 2011 UTC (6 years, 3 months ago) by nyulas
Created new scripts directory: import_TAGs_and_status

Revision 23343 - Directory Listing
Modified Thu Jul 21 19:55:00 2011 UTC (6 years, 3 months ago) by nyulas
Just for testing

Revision 23342 - Directory Listing
Modified Thu Jul 21 19:49:57 2011 UTC (6 years, 3 months ago) by nyulas
Added excel_import_tags.jar

Revision 23340 - Directory Listing
Modified Thu Jul 21 19:48:37 2011 UTC (6 years, 3 months ago) by nyulas
Updated build file and Excel table with TAGs and statuses.

Revision 23335 - Directory Listing
Modified Thu Jul 21 00:54:11 2011 UTC (6 years, 3 months ago) by nyulas
Fix to avoid NullPointerException

Revision 23223 - Directory Listing
Modified Thu Jul 14 00:30:38 2011 UTC (6 years, 3 months ago) by tudorache
added serialVersionUID to all serializable classes

Revision 23220 - Directory Listing
Modified Wed Jul 13 23:17:44 2011 UTC (6 years, 3 months ago) by tudorache
moved all util methods in this class in ModelUtilities in protege-core

Revision 23219 - Directory Listing
Modified Wed Jul 13 23:17:16 2011 UTC (6 years, 3 months ago) by tudorache
moved some util methods to ModelUtilities

Revision 23217 - Directory Listing
Modified Wed Jul 13 23:01:24 2011 UTC (6 years, 3 months ago) by tudorache
removed @override

Revision 23155 - Directory Listing
Modified Fri Jul 8 22:26:02 2011 UTC (6 years, 3 months ago) by nyulas
Initial (partial) list of CM changes necessary to better support indexes, inclusions and exclusions in ICD-11.

Revision 23154 - Directory Listing
Modified Fri Jul 8 22:22:09 2011 UTC (6 years, 3 months ago) by nyulas
Added new script for importing assigned TAGs and display status to iCAT from an Excel workbook and also updated content model and other related source codes and resources

Revision 23011 - Directory Listing
Modified Thu Jun 23 20:06:48 2011 UTC (6 years, 4 months ago) by nyulas
minor updates

Revision 23010 - Directory Listing
Modified Thu Jun 23 19:44:53 2011 UTC (6 years, 4 months ago) by nyulas
Leftover from previous commits: ReorganizeRetired was renamed and updated in ReorganizeRetiredMuskuloSkeletal

Revision 23009 - Directory Listing
Modified Thu Jun 23 19:34:02 2011 UTC (6 years, 4 months ago) by tudorache
minor changes, not sure what

Revision 23008 - Directory Listing
Modified Thu Jun 23 19:33:08 2011 UTC (6 years, 4 months ago) by tudorache
not sure what changes, but minor

Revision 22920 - Directory Listing
Modified Thu Jun 16 01:02:49 2011 UTC (6 years, 4 months ago) by tudorache
generics didn't work

Revision 22919 - Directory Listing
Modified Thu Jun 16 00:58:24 2011 UTC (6 years, 4 months ago) by tudorache
generics

Revision 22918 - Directory Listing
Modified Thu Jun 16 00:52:32 2011 UTC (6 years, 4 months ago) by tudorache
a util class that should be moved to protege-core after the webprotege release and should be included in the next protege release

Revision 22917 - Directory Listing
Modified Thu Jun 16 00:51:27 2011 UTC (6 years, 4 months ago) by tudorache
added methods and constants to deal with the assignement of primary and inherited tags

Revision 22846 - Directory Listing
Modified Sat Jun 4 02:16:49 2011 UTC (6 years, 4 months ago) by tudorache
- Created obj prop: assignedTAG, and subproperties: assignedPrimaryTAG (single card) and assignedSecondaryTAG, domain: ICDSection, range:TAG
- Created class DisplayStatusValueSet under ValueSet, and created 3 instances: green, yellow, red and added rdfs:label
- Created obj property displayStatus with domain ICDSection and range DisplayStatusValueSet

Revision 22845 - Directory Listing
Modified Sat Jun 4 02:01:39 2011 UTC (6 years, 4 months ago) by tudorache
created class TAG under ValueSet and added instances from Sara's list

Revision 22841 - Directory Listing
Modified Sat Jun 4 01:05:32 2011 UTC (6 years, 4 months ago) by tudorache
ICD content model from iCAT production as of 2011.06.03

Revision 22840 - Directory Listing
Modified Sat Jun 4 00:57:09 2011 UTC (6 years, 4 months ago) by tudorache
removed files that should not be in svn

Revision 22839 - Directory Listing
Modified Sat Jun 4 00:55:05 2011 UTC (6 years, 4 months ago) by tudorache
moved icd specific stuff from webprotege

Revision 22837 - Directory Listing
Modified Sat Jun 4 00:52:35 2011 UTC (6 years, 4 months ago) by tudorache
minor: fixed spelling

Revision 22836 - Directory Listing
Modified Sat Jun 4 00:50:36 2011 UTC (6 years, 4 months ago) by tudorache
moved to the scripts folder

Revision 22835 - Directory Listing
Modified Sat Jun 4 00:49:48 2011 UTC (6 years, 4 months ago) by tudorache
removed bin - not needed

Revision 22834 - Directory Listing
Modified Sat Jun 4 00:49:25 2011 UTC (6 years, 4 months ago) by tudorache
moved all scripts in the scripts folder

Revision 22833 - Directory Listing
Modified Sat Jun 4 00:41:03 2011 UTC (6 years, 4 months ago) by tudorache
removed old ICD files

Revision 22832 - Directory Listing
Modified Sat Jun 4 00:38:20 2011 UTC (6 years, 4 months ago) by tudorache
removed unneeded files

Revision 22831 - Directory Listing
Modified Sat Jun 4 00:38:06 2011 UTC (6 years, 4 months ago) by tudorache
bk folder

Revision 22830 - Directory Listing
Modified Sat Jun 4 00:35:13 2011 UTC (6 years, 4 months ago) by tudorache
removed P4 repository file

Revision 22829 - Directory Listing
Modified Sat Jun 4 00:34:26 2011 UTC (6 years, 4 months ago) by tudorache
removed the mysql folder

Revision 22828 - Directory Listing
Modified Sat Jun 4 00:33:20 2011 UTC (6 years, 4 months ago) by tudorache
removed archive protege folder

Revision 22827 - Directory Listing
Modified Sat Jun 4 00:31:19 2011 UTC (6 years, 4 months ago) by tudorache
removed lucene folders

Revision 22826 - Directory Listing
Modified Sat Jun 4 00:29:18 2011 UTC (6 years, 4 months ago) by tudorache
moved from webprotege project
should contain the latest ictm cm

Revision 22825 - Directory Listing
Modified Sat Jun 4 00:26:46 2011 UTC (6 years, 4 months ago) by tudorache
moved from webprotege project
should contain the latest ictm cm

Revision 22824 - Directory Listing
Modified Sat Jun 4 00:26:07 2011 UTC (6 years, 4 months ago) by tudorache
moved from webprotege project
should contain the latest icd cm

Revision 22707 - Directory Listing
Modified Mon May 9 23:04:45 2011 UTC (6 years, 5 months ago) by tudorache
remove override

Revision 22706 - Directory Listing
Modified Mon May 9 23:04:24 2011 UTC (6 years, 5 months ago) by tudorache
remove override

Revision 22697 - Directory Listing
Modified Sun May 8 04:25:57 2011 UTC (6 years, 5 months ago) by nyulas
fix for chao

Revision 22696 - Directory Listing
Modified Sun May 8 04:25:33 2011 UTC (6 years, 5 months ago) by nyulas
fix for chao

Revision 22695 - Directory Listing
Modified Sun May 8 04:11:32 2011 UTC (6 years, 5 months ago) by nyulas
fix for chao

Revision 22694 - Directory Listing
Modified Sun May 8 04:11:18 2011 UTC (6 years, 5 months ago) by nyulas
fix for chao

Revision 22693 - Directory Listing
Modified Sun May 8 03:23:24 2011 UTC (6 years, 5 months ago) by nyulas
added chao

Revision 22692 - Directory Listing
Modified Sun May 8 02:57:19 2011 UTC (6 years, 5 months ago) by nyulas
new jar

Revision 22691 - Directory Listing
Modified Sun May 8 02:55:17 2011 UTC (6 years, 5 months ago) by nyulas
fixed field label

Revision 22690 - Directory Listing
Modified Sun May 8 02:54:44 2011 UTC (6 years, 5 months ago) by nyulas
writing also to chao

Revision 22689 - Directory Listing
Modified Sat May 7 07:15:49 2011 UTC (6 years, 5 months ago) by nyulas
Added checks for potential problems in the extracted category infos.

Revision 22683 - Directory Listing
Modified Fri May 6 21:39:42 2011 UTC (6 years, 5 months ago) by nyulas
Fixing the title of the BulkRetired_XXXXXX class.

Revision 22682 - Directory Listing
Modified Fri May 6 06:08:06 2011 UTC (6 years, 5 months ago) by nyulas
Added some more logs

Revision 22681 - Directory Listing
Modified Fri May 6 05:36:35 2011 UTC (6 years, 5 months ago) by nyulas
typo

Revision 22680 - Directory Listing
Modified Fri May 6 05:35:45 2011 UTC (6 years, 5 months ago) by nyulas
added the icd jars

Revision 22679 - Directory Listing
Modified Fri May 6 05:29:59 2011 UTC (6 years, 5 months ago) by nyulas


Revision 22678 - Directory Listing
Modified Fri May 6 05:01:13 2011 UTC (6 years, 5 months ago) by nyulas
Added more logs

Revision 22677 - Directory Listing
Modified Fri May 6 04:50:41 2011 UTC (6 years, 5 months ago) by nyulas
Added some more log messages and fixed existing logging mechanism

Revision 22676 - Directory Listing
Modified Fri May 6 03:29:43 2011 UTC (6 years, 5 months ago) by nyulas
Fixed the jar file to contain the old, but updated, ImportChapterXX class as well.

Revision 22675 - Directory Listing
Modified Fri May 6 03:20:41 2011 UTC (6 years, 5 months ago) by nyulas
excel sheet for April import

Revision 22674 - Directory Listing
Modified Fri May 6 03:16:44 2011 UTC (6 years, 5 months ago) by tudorache
removed eclipse file

Revision 22671 - Directory Listing
Modified Fri May 6 02:50:16 2011 UTC (6 years, 5 months ago) by nyulas
reverted to previous revision (19626), because last change was a mistake.

Revision 22670 - Directory Listing
Modified Fri May 6 02:48:39 2011 UTC (6 years, 5 months ago) by nyulas
Changed build.xml to run ImportChapterXX_April2011

Revision 22669 - Directory Listing
Modified Fri May 6 02:47:01 2011 UTC (6 years, 5 months ago) by nyulas
Changed build.xml to run ImportChapterXX_April2011

Revision 22667 - Directory Listing
Modified Fri May 6 00:17:15 2011 UTC (6 years, 5 months ago) by nyulas
New jar files for the April 2011 import script.

Revision 22666 - Directory Listing
Modified Thu May 5 23:51:55 2011 UTC (6 years, 5 months ago) by nyulas
Belated commit.

Revision 22665 - Directory Listing
Modified Thu May 5 23:36:14 2011 UTC (6 years, 5 months ago) by nyulas
New import for Chapter XX

Revision 22664 - Directory Listing
Modified Thu May 5 23:18:55 2011 UTC (6 years, 5 months ago) by nyulas
Late commit of the new jar that uses the reorganized classes (i.e. We have some important util functionality extracted in the ImportUtils class)

Revision 22536 - Directory Listing
Modified Fri Apr 22 21:53:56 2011 UTC (6 years, 6 months ago) by tudorache
minor - using a constant

Revision 22378 - Directory Listing
Modified Sun Apr 10 03:59:33 2011 UTC (6 years, 6 months ago) by nyulas
added label for linearization specification instances and diagnostic criteria instances

Revision 22377 - Directory Listing
Modified Sun Apr 10 03:27:35 2011 UTC (6 years, 6 months ago) by tudorache
new util

Revision 22304 - Directory Listing
Modified Fri Apr 1 23:09:34 2011 UTC (6 years, 6 months ago) by tudorache
changed logging

Revision 22270 - Directory Listing
Modified Thu Mar 31 23:23:29 2011 UTC (6 years, 6 months ago) by tudorache
print the date for the last access time of icat users

Revision 22264 - Directory Listing
Modified Thu Mar 31 06:28:03 2011 UTC (6 years, 6 months ago) by nyulas
Fixed specialized problematic class counters; added a new overall problematic class counter; set logging level programmatically to FINE

Revision 22263 - Directory Listing
Modified Thu Mar 31 01:46:07 2011 UTC (6 years, 6 months ago) by nyulas
Added counters for the different type of errors related to the linearization parents.
Reduced logging level for errors related to linearization parents in RETIRED classes.

Revision 22262 - Directory Listing
Modified Thu Mar 31 01:04:15 2011 UTC (6 years, 6 months ago) by nyulas
Added more validity checks and warnings for invalid linearization parents

Revision 22256 - Directory Listing
Modified Wed Mar 30 23:40:47 2011 UTC (6 years, 6 months ago) by nyulas
Added new functionality to remove linearization parents for for classes with single parent.
Changed System.out.print to System.out.println before user input request, in order to work from within an ant script.

Revision 22232 - Directory Listing
Modified Wed Mar 30 18:13:05 2011 UTC (6 years, 6 months ago) by nyulas
Changed logging of FixLinearizations to "fine" to avoid too many output on the console.
Also committed the jardesc files for creating the fix_linearizations.jar and the reorg_retired_muscles.jar

Revision 22219 - Directory Listing
Modified Wed Mar 30 05:55:48 2011 UTC (6 years, 6 months ago) by nyulas
Renamed ReorganizeRetired to ReorganizeRetiredMuskuloSkeletal, and implemented FixLinearization and created ant script for both.

Revision 22107 - Directory Listing
Modified Wed Mar 23 00:28:46 2011 UTC (6 years, 7 months ago) by nyulas
Fixes related to the way (a) title terms are created, (b) matching of code groups are made, (c) existing grouping classes are reused and (d) progress is logged.

Revision 22101 - Directory Listing
Modified Tue Mar 22 05:52:04 2011 UTC (6 years, 7 months ago) by nyulas
Added new utility method to reorganize the bulk-retired MuskuloSkeletal classes in order to improve iCAT performance while presenting it.


Revision 22008 - Directory Listing
Modified Wed Mar 16 20:53:11 2011 UTC (6 years, 7 months ago) by nyulas
Modified script to order exported classes by browser text (i.e. sortingLabel + icdTitle) not only by sorting label

Revision 21547 - Directory Listing
Modified Wed Feb 2 04:00:12 2011 UTC (6 years, 8 months ago) by tudorache
weird behavior with attaching the listeners...
made the getListener even safer.. it did not work well with multiple kbs before

Revision 21538 - Directory Listing
Modified Wed Feb 2 01:42:06 2011 UTC (6 years, 8 months ago) by tudorache
added the meridians vs

Revision 21536 - Directory Listing
Modified Wed Feb 2 01:26:41 2011 UTC (6 years, 8 months ago) by tudorache
creating also the linearizations

Revision 21519 - Directory Listing
Modified Tue Feb 1 00:39:43 2011 UTC (6 years, 8 months ago) by tudorache
importer for ICTm value sets for ICTM release Jan 31, 2011

Revision 21518 - Directory Listing
Modified Tue Feb 1 00:39:20 2011 UTC (6 years, 8 months ago) by tudorache
new version of the importer for ICTM release Jan. 31

Revision 21495 - Directory Listing
Modified Fri Jan 28 23:25:03 2011 UTC (6 years, 8 months ago) by tudorache
change name of retired parent

Revision 21468 - Directory Listing
Modified Thu Jan 27 01:13:09 2011 UTC (6 years, 8 months ago) by tudorache
new version

Revision 21466 - Directory Listing
Modified Thu Jan 27 01:10:53 2011 UTC (6 years, 8 months ago) by tudorache
changed name and location of retire cls

Revision 21413 - Directory Listing
Modified Tue Jan 25 00:02:49 2011 UTC (6 years, 9 months ago) by tudorache
the jar..

Revision 21411 - Directory Listing
Modified Mon Jan 24 23:57:21 2011 UTC (6 years, 9 months ago) by tudorache
retire script

Revision 21410 - Directory Listing
Modified Mon Jan 24 23:54:22 2011 UTC (6 years, 9 months ago) by tudorache
add the retire

Revision 21409 - Directory Listing
Modified Mon Jan 24 23:54:05 2011 UTC (6 years, 9 months ago) by tudorache
add the retire

Revision 21391 - Directory Listing
Modified Mon Jan 24 19:02:58 2011 UTC (6 years, 9 months ago) by tudorache
changed histopathology -> morphology at the request of Bedirhan, and to be in sync with the content model document from Dec. 2010

Revision 21209 - Directory Listing
Modified Fri Jan 7 23:38:58 2011 UTC (6 years, 9 months ago) by tudorache
used to retire the muskulo skeletal

Revision 21208 - Directory Listing
Modified Fri Jan 7 23:38:37 2011 UTC (6 years, 9 months ago) by tudorache
script to retire muskulo skeletal

Revision 21207 - Directory Listing
Modified Fri Jan 7 22:38:12 2011 UTC (6 years, 9 months ago) by tudorache
minor optimization

Revision 21206 - Directory Listing
Modified Fri Jan 7 22:29:59 2011 UTC (6 years, 9 months ago) by tudorache
fix for multiple projects

Revision 21139 - Directory Listing
Modified Thu Dec 23 16:16:27 2010 UTC (6 years, 10 months ago) by tudorache
added back the lucence update

Revision 20996 - Directory Listing
Modified Sat Dec 4 02:02:00 2010 UTC (6 years, 10 months ago) by tudorache
good to test your computer with multiple threads

Revision 20995 - Directory Listing
Modified Sat Dec 4 02:01:39 2010 UTC (6 years, 10 months ago) by tudorache
add metaclass

Revision 20947 - Directory Listing
Modified Thu Dec 2 01:53:16 2010 UTC (6 years, 10 months ago) by elliott
Adding new Import functionality for the TM project.

Revision 20903 - Directory Listing
Modified Mon Nov 22 17:31:47 2010 UTC (6 years, 11 months ago) by elliott
saving in excel 2007 format

Revision 20886 - Directory Listing
Modified Sat Nov 20 03:27:54 2010 UTC (6 years, 11 months ago) by tudorache
added logging

Revision 20880 - Directory Listing
Modified Sat Nov 20 02:38:42 2010 UTC (6 years, 11 months ago) by nyulas
- Trying to fix the drop-down list issues in column A and M by reorganizing names. Needs to be tested if it helps.
- Fixed inconsistencies in last column on "Example" sheet
- Added explanation about the red colored cell in AJ column

Revision 20876 - Directory Listing
Modified Sat Nov 20 00:56:20 2010 UTC (6 years, 11 months ago) by nyulas
Replaced "/" with File.separator so that file paths are OS-independent

Revision 20871 - Directory Listing
Modified Fri Nov 19 21:30:46 2010 UTC (6 years, 11 months ago) by nyulas
Fixed (again) the formatting of the hidden columns on the "Authoring Guide" sheet. Hopefully it will work this time.

Revision 20864 - Directory Listing
Modified Fri Nov 19 01:59:42 2010 UTC (6 years, 11 months ago) by nyulas
Updated list of TAGs (used as values in the drop-down list on the "Front Page" sheet, and fixed some formatting on the "Authoring Guide" sheet

Revision 20852 - Directory Listing
Modified Wed Nov 17 18:22:36 2010 UTC (6 years, 11 months ago) by elliott
Removing extraneous formatting from the Example sheet, and reduced the macros on the Export sheet to one. The Export macro has been changed to simply duplicate the data from the Authoring Template.

Revision 20843 - Directory Listing
Modified Wed Nov 17 00:58:21 2010 UTC (6 years, 11 months ago) by elliott
Adding support for the creation of non-ICD classes.

Revision 20839 - Directory Listing
Modified Wed Nov 17 00:15:06 2010 UTC (6 years, 11 months ago) by nyulas
Reformatted "Authoring Guide" sheet. There were many little changes to be done, like:
- making sure that the hidden cells have the right size and the right content (especially for the cell legend part)
- auto-fitting all rows (except the cell legend part, that needed to refit manually)
- unifying font size and formatting for sub-headings.
- improving the formulation of some text in the cell legend part.



Revision 20791 - Directory Listing
Modified Fri Nov 12 16:28:28 2010 UTC (6 years, 11 months ago) by elliott
Cleaning up the Authoring Guide by changing the title, introducing a new heading and cleaning up some of the legend text.

Revision 20790 - Directory Listing
Modified Fri Nov 12 02:47:42 2010 UTC (6 years, 11 months ago) by elliott
Reformatting title of Retire.

Revision 20789 - Directory Listing
Modified Fri Nov 12 02:42:17 2010 UTC (6 years, 11 months ago) by elliott
Reformatting title of legend.

Revision 20788 - Directory Listing
Modified Fri Nov 12 02:38:42 2010 UTC (6 years, 11 months ago) by elliott
Reformatting legend.

Revision 20787 - Directory Listing
Modified Fri Nov 12 02:31:54 2010 UTC (6 years, 11 months ago) by elliott
Adding legend.

Revision 20786 - Directory Listing
Modified Thu Nov 11 20:38:23 2010 UTC (6 years, 11 months ago) by elliott
Changed cell borders on Authoring Template.

Revision 20785 - Directory Listing
Modified Thu Nov 11 19:47:10 2010 UTC (6 years, 11 months ago) by elliott
Added drop-down list for TAGs on front page as suggested by RC.

Revision 20784 - Directory Listing
Modified Thu Nov 11 19:18:24 2010 UTC (6 years, 11 months ago) by elliott
Fixing the issues raised by RC. These include the reformatting cells on the front page, fixing formatting issues with the example sheet, unprotecting the example sheet and making all subsequent rows of the template normally formatted

Revision 20777 - Directory Listing
Modified Wed Nov 10 02:34:48 2010 UTC (6 years, 11 months ago) by nyulas
- Fixed "Authoring guide" to be as compatible as possible with jexcel
- Cleaned up a bit the background colors on the "Front page"

Revision 20775 - Directory Listing
Modified Tue Nov 9 21:28:26 2010 UTC (6 years, 11 months ago) by elliott
Correcting problem with the non-utf-8 encoding. We were exporting using the python default of iso 8859-1, but we now use python to write out utf-8 and we read it back in using Java's utf-8 encoding. Both sides match as they take their encoding 'type' from the same location - the file.encoding property.

Revision 20772 - Directory Listing
Modified Tue Nov 9 18:06:40 2010 UTC (6 years, 11 months ago) by elliott
Updating build file so that we no longer bundle the template and script files with the built jar.

Revision 20771 - Directory Listing
Modified Tue Nov 9 16:56:54 2010 UTC (6 years, 11 months ago) by elliott
Moving the python initialization.

Revision 20768 - Directory Listing
Modified Tue Nov 9 02:38:49 2010 UTC (6 years, 11 months ago) by elliott
Merging the export build into the icd jar build.

Revision 20767 - Directory Listing
Modified Mon Nov 8 23:41:40 2010 UTC (6 years, 11 months ago) by elliott
Adding the property to change the Jython table to use weak internal references. Note that this does not make any noticeable difference to the actual running of the application.

Revision 20766 - Directory Listing
Modified Mon Nov 8 19:43:56 2010 UTC (6 years, 11 months ago) by elliott
Cleaning up the finally block in the JxlCsvToExcelConverter. This will now attempt to clean up all resources and will continue to do so even if one throws a runtime error.

Revision 20763 - Directory Listing
Modified Mon Nov 8 07:03:18 2010 UTC (6 years, 11 months ago) by tudorache
taking out the lucene index updater - lucene is not ready yet.
- this line should be put back when lucene is ready for release

Revision 20762 - Directory Listing
Modified Mon Nov 8 06:20:01 2010 UTC (6 years, 11 months ago) by tudorache
fixed numbering of plugin dependency

Revision 20758 - Directory Listing
Modified Mon Nov 8 05:06:03 2010 UTC (6 years, 11 months ago) by tudorache
minor optimization

Revision 20757 - Directory Listing
Modified Mon Nov 8 05:03:26 2010 UTC (6 years, 11 months ago) by tudorache
fix for a weird initialization problem - listener got attached to the wrong ontology

Revision 20756 - Directory Listing
Modified Mon Nov 8 04:04:04 2010 UTC (6 years, 11 months ago) by nyulas
Set "Front page" sheet as default

Revision 20755 - Directory Listing
Modified Mon Nov 8 04:02:13 2010 UTC (6 years, 11 months ago) by nyulas
- Fixed calculation of word counts after row 423
- Added conditional formatting to word count columns to signal possible problems

Revision 20754 - Directory Listing
Modified Mon Nov 8 03:15:22 2010 UTC (6 years, 11 months ago) by nyulas
- Make all columns visible
- Fixed formatting of the "word count" columns, and "original sorting order" column, for ALL rows.

Revision 20752 - Directory Listing
Modified Mon Nov 8 00:53:55 2010 UTC (6 years, 11 months ago) by tudorache
forgot a paranthesis


Revision 20745 - Directory Listing
Modified Sun Nov 7 23:44:45 2010 UTC (6 years, 11 months ago) by nyulas
- Set content of cell I5 (concept title) on the Front Page
- Fixed some spaces on "Authoring Guide" sheet so that it looks somewhat better after export
- resized word count column widths to fit on the same page with "Concise definition", "Detailed definition"

Revision 20742 - Directory Listing
Modified Sun Nov 7 23:36:30 2010 UTC (6 years, 11 months ago) by tudorache
remove also carriage return from the string (chr(13)). We should filter out all char < 32, and quote every cell

Revision 20738 - Directory Listing
Modified Sun Nov 7 15:51:28 2010 UTC (6 years, 11 months ago) by tudorache
don't set the linearization parent when creating a new icd category

Revision 20722 - Directory Listing
Modified Sat Nov 6 22:38:46 2010 UTC (6 years, 11 months ago) by nyulas
Fixed several typos in the "Authoring guide" sheet. (Also updated the online document)

Revision 20721 - Directory Listing
Modified Sat Nov 6 22:26:14 2010 UTC (6 years, 11 months ago) by nyulas
- Added Robert Chalmers updated "Front page"
- Fixed instructions about Navigation on the "User Help" sheet
- Fixed "Contextual Help" button on both the "Authoring template" and the "Example" sheet.


Revision 20716 - Directory Listing
Modified Sat Nov 6 02:50:11 2010 UTC (6 years, 11 months ago) by nyulas
Slightly increased the width of "Concept type" column to fit most (all but one) values. Now both "Class heading" and "External Causes" can be displayed in a single line, only "Reason for Encounter" cannot.

Revision 20715 - Directory Listing
Modified Fri Nov 5 23:23:48 2010 UTC (6 years, 11 months ago) by elliott
fixing problem with the ICD 10 comments appearing in row A, completely obscuring the editing for that row.

Revision 20711 - Directory Listing
Modified Fri Nov 5 21:02:12 2010 UTC (6 years, 11 months ago) by elliott
merging Robert Chalmer's changes with ours and adding conditional formatting to the warning row (to display in red) and the frozen rows(to display in gray when item is retired)

Revision 20701 - Directory Listing
Modified Fri Nov 5 17:36:18 2010 UTC (6 years, 11 months ago) by elliott
changing notes from a text area to plain text

Revision 20699 - Directory Listing
Modified Fri Nov 5 16:06:08 2010 UTC (6 years, 11 months ago) by elliott
Removing unused jar files.

Revision 20698 - Directory Listing
Modified Fri Nov 5 15:58:43 2010 UTC (6 years, 11 months ago) by elliott
Refactoring code. Removing no longer utilized methods and functions and moving the packages around. Also stripped the bulk of the python files.

Revision 20697 - Directory Listing
Modified Fri Nov 5 07:14:38 2010 UTC (6 years, 11 months ago) by nyulas
Significant improvement, especially on the "Authoring Guide" sheet, renamed and added new value set for "Retire?" column, reformatted tooltip help messages.

Revision 20696 - Directory Listing
Modified Fri Nov 5 01:40:16 2010 UTC (6 years, 11 months ago) by elliott
changing button styles

Revision 20695 - Directory Listing
Modified Fri Nov 5 00:52:59 2010 UTC (6 years, 11 months ago) by nyulas
Updated explanation sheet and fixed some formatting in the Authoring Template

Revision 20684 - Directory Listing
Modified Thu Nov 4 15:58:11 2010 UTC (6 years, 11 months ago) by elliott
Now reads the csv.file.encoding property from an application or system property.

Revision 20682 - Directory Listing
Modified Thu Nov 4 14:49:36 2010 UTC (6 years, 11 months ago) by tudorache
selected the authoring template as the first sheet to see, use yellow background for instrauctions

Revision 20681 - Directory Listing
Modified Thu Nov 4 14:39:59 2010 UTC (6 years, 11 months ago) by tudorache
added the authoring instructions with samson's col descriptions

Revision 20666 - Directory Listing
Modified Thu Nov 4 04:08:15 2010 UTC (6 years, 11 months ago) by elliott
Now no longer uses the getColumnName method.

Revision 20665 - Directory Listing
Modified Thu Nov 4 03:54:40 2010 UTC (6 years, 11 months ago) by elliott
changing note to import field.

Revision 20664 - Directory Listing
Modified Thu Nov 4 03:49:55 2010 UTC (6 years, 11 months ago) by elliott
Now properly reads in accented characters.

Revision 20662 - Directory Listing
Modified Thu Nov 4 02:39:12 2010 UTC (6 years, 11 months ago) by elliott
adding file

Revision 20659 - Directory Listing
Modified Thu Nov 4 01:07:29 2010 UTC (6 years, 11 months ago) by elliott
Changing the header text for the temporal modifier field to temporal qualifier.

Revision 20655 - Directory Listing
Modified Thu Nov 4 00:34:08 2010 UTC (6 years, 11 months ago) by elliott
Changing text for the laterality field.

Revision 20642 - Directory Listing
Modified Wed Nov 3 23:59:47 2010 UTC (6 years, 11 months ago) by elliott
Removed virtually all buttons from the top of the screen. These were mostly duplicates for the expand/collapse row functionality which is always available in the freeze frame.

Revision 20632 - Directory Listing
Modified Wed Nov 3 18:41:55 2010 UTC (6 years, 11 months ago) by elliott
Now preserves the blank cells in a spreadsheet when doing the conditional (pink) formatting on duplicate rows.

Revision 20631 - Directory Listing
Modified Wed Nov 3 16:10:26 2010 UTC (6 years, 11 months ago) by elliott
First pass of macro audit; many of the macros were simply duplicates of the expand collapse column functionality, others were simply empty commands. Also reformatted the buttons to appear always at the top of the screen.

Revision 20630 - Directory Listing
Modified Wed Nov 3 02:02:46 2010 UTC (6 years, 11 months ago) by elliott
Reverting conditional formatting.

Revision 20629 - Directory Listing
Modified Tue Nov 2 22:57:03 2010 UTC (6 years, 11 months ago) by elliott
Enhancing error handling.

Revision 20628 - Directory Listing
Modified Tue Nov 2 22:32:44 2010 UTC (6 years, 11 months ago) by elliott
Cleaning up conditional formatting and adding instructions on unhiding columns on a mac.

Revision 20627 - Directory Listing
Modified Tue Nov 2 22:03:19 2010 UTC (6 years, 11 months ago) by elliott
Adding conditional formatting for duplicate rows.

Revision 20623 - Directory Listing
Modified Tue Nov 2 19:03:23 2010 UTC (6 years, 11 months ago) by elliott
Capitalizing constants.

Revision 20621 - Directory Listing
Modified Tue Nov 2 18:46:19 2010 UTC (6 years, 11 months ago) by elliott
Checking in many minor changes and fixes, together with the functionality to 'deduplicate' rows that are repeated. These now emit only their icd 10 codes, titles and class names.

Revision 20617 - Directory Listing
Modified Tue Nov 2 01:36:39 2010 UTC (6 years, 11 months ago) by elliott
Making some minor improvements to the ICDExporterPlugin.

Revision 20615 - Directory Listing
Modified Tue Nov 2 01:19:14 2010 UTC (6 years, 11 months ago) by elliott
Now returns the absolute path of the excel file created.

Revision 20614 - Directory Listing
Modified Tue Nov 2 00:51:08 2010 UTC (6 years, 11 months ago) by elliott
Adding extra null check.

Revision 20613 - Directory Listing
Modified Mon Nov 1 22:14:21 2010 UTC (6 years, 11 months ago) by elliott
Now copies the Lib directory for the python imports correctly.

Revision 20612 - Directory Listing
Modified Mon Nov 1 21:59:39 2010 UTC (6 years, 11 months ago) by elliott
Removing log message for each class we export.

Revision 20611 - Directory Listing
Modified Mon Nov 1 21:53:02 2010 UTC (6 years, 11 months ago) by elliott
Dialling down the logging from JExcel.

Revision 20610 - Directory Listing
Modified Mon Nov 1 21:44:30 2010 UTC (6 years, 11 months ago) by elliott
Adding first cut of functioning server-side code, along with the build scripts and tests to support it.

Revision 20597 - Directory Listing
Modified Fri Oct 29 22:40:41 2010 UTC (6 years, 11 months ago) by elliott
Corrections to the ordering of buttons and some corrections to the button text.

Revision 20594 - Directory Listing
Modified Fri Oct 29 21:15:56 2010 UTC (6 years, 11 months ago) by elliott
Introducing version of jython and it's dependent Lib directory that can run our script independently of a full Jython install.

Revision 20593 - Directory Listing
Modified Fri Oct 29 21:13:30 2010 UTC (6 years, 11 months ago) by elliott
Renaming packages.

Revision 20591 - Directory Listing
Modified Fri Oct 29 20:22:52 2010 UTC (6 years, 11 months ago) by elliott
Changing the colors of various fields to emphasize what can and cannot be edited. Also fixing the word count macros, which were broken.

Revision 20586 - Directory Listing
Modified Fri Oct 29 19:05:40 2010 UTC (6 years, 11 months ago) by elliott
Moving the Body Part information to its own spreadsheet, filtering results in the Body Part Value Set worsheet by structure and expanding the content of Body Part Value Set.

Revision 20585 - Directory Listing
Modified Fri Oct 29 18:54:53 2010 UTC (6 years, 11 months ago) by elliott
Cleaning up the Body Part Value Set sheet by adding new rows and filtering so that the snomed column text always contains the word structure.

Revision 20584 - Directory Listing
Modified Fri Oct 29 17:54:44 2010 UTC (6 years, 11 months ago) by elliott
Updating script to use environment variables.

Revision 20583 - Directory Listing
Modified Fri Oct 29 17:28:01 2010 UTC (6 years, 11 months ago) by elliott
Adding first cut of build file.

Revision 20582 - Directory Listing
Modified Fri Oct 29 17:02:23 2010 UTC (6 years, 11 months ago) by elliott
Adding patches for jexcel api together with the binary patched jar.

Revision 20581 - Directory Listing
Modified Fri Oct 29 16:28:19 2010 UTC (6 years, 11 months ago) by elliott
Removing jexcelapi.

Revision 20580 - Directory Listing
Modified Fri Oct 29 16:27:07 2010 UTC (6 years, 11 months ago) by elliott
adding the patched version of jexcelapi that we modified to check for null formulae on copy

Revision 20579 - Directory Listing
Modified Fri Oct 29 16:19:30 2010 UTC (6 years, 11 months ago) by elliott
Cleaning up button naming and placement on Authoring Template. Buttons are now a consistent distance from the top (depending on row) and are consistently named and placed (Shrink has been renamed to collapse and collapse is always beneath the corresponding expand button)

Revision 20576 - Directory Listing
Modified Fri Oct 29 15:36:48 2010 UTC (6 years, 11 months ago) by elliott
Adding body part sheet to workbook.

Revision 20573 - Directory Listing
Modified Fri Oct 29 01:37:04 2010 UTC (6 years, 11 months ago) by elliott
Changing the name of ValuesTest

Revision 20572 - Directory Listing
Modified Fri Oct 29 01:20:27 2010 UTC (6 years, 11 months ago) by elliott
Cleaning up comments and strings in the thrown exception.

Revision 20571 - Directory Listing
Modified Fri Oct 29 01:18:05 2010 UTC (6 years, 11 months ago) by elliott
Committing new test cases that verify our output to the excel file.

Revision 20569 - Directory Listing
Modified Thu Oct 28 19:41:01 2010 UTC (6 years, 11 months ago) by elliott
fixing issue reported by RC that saw the add body values button not work if no values were selected

Revision 20566 - Directory Listing
Modified Thu Oct 28 00:51:43 2010 UTC (6 years, 11 months ago) by elliott
clearing contents from cell Y23

Revision 20561 - Directory Listing
Modified Thu Oct 28 00:44:29 2010 UTC (6 years, 11 months ago) by elliott
correcting problems with indentation in the value sets.

Revision 20558 - Directory Listing
Modified Thu Oct 28 00:42:52 2010 UTC (6 years, 11 months ago) by elliott
reverting to version untouched by open office.

Revision 20553 - Directory Listing
Modified Wed Oct 27 23:33:17 2010 UTC (6 years, 11 months ago) by elliott
Removing the mappings functionality, but leaving the hook in.

Revision 20552 - Directory Listing
Modified Wed Oct 27 22:50:02 2010 UTC (6 years, 11 months ago) by elliott
Saved using open office, which seems necessary to get the converter to work.

Revision 20551 - Directory Listing
Modified Wed Oct 27 22:41:58 2010 UTC (6 years, 11 months ago) by elliott
clearing contents of row W4.

Revision 20550 - Directory Listing
Modified Wed Oct 27 22:36:04 2010 UTC (6 years, 11 months ago) by elliott
removing contents of first row of body system.

Revision 20549 - Directory Listing
Modified Wed Oct 27 22:31:43 2010 UTC (6 years, 11 months ago) by elliott
removing validation from first field of body system.

Revision 20548 - Directory Listing
Modified Wed Oct 27 22:04:11 2010 UTC (6 years, 11 months ago) by elliott
restoring Robert Chalmers macro functions.

Revision 20546 - Directory Listing
Modified Wed Oct 27 19:48:37 2010 UTC (6 years, 11 months ago) by elliott
Adding support for timestamp importing from our export csv into Excel.

Revision 20541 - Directory Listing
Modified Wed Oct 27 18:00:31 2010 UTC (6 years, 11 months ago) by elliott
removing data from the Authoring Template sheet.

Revision 20539 - Directory Listing
Modified Wed Oct 27 17:33:44 2010 UTC (6 years, 11 months ago) by elliott
adding validation to the multi-selection macro. We now confirm that a user has selected the right column before allowing them to proceed with the macro.

Revision 20531 - Directory Listing
Modified Tue Oct 26 23:20:20 2010 UTC (6 years, 11 months ago) by elliott
adding first cut of the multi-value validation macro

Revision 20512 - Directory Listing
Modified Tue Oct 26 21:47:05 2010 UTC (6 years, 11 months ago) by elliott
extending validation to the bottom of the sheet

Revision 20503 - Directory Listing
Modified Tue Oct 26 21:21:49 2010 UTC (6 years, 11 months ago) by elliott
updating the spreadsheet with the latest version from Robert Chalmers

Revision 20488 - Directory Listing
Modified Tue Oct 26 01:51:45 2010 UTC (7 years ago) by elliott
Removed all traces of the mapping column names to column names strategy and also removed the error checking that we got with it.

Revision 20487 - Directory Listing
Modified Tue Oct 26 01:44:24 2010 UTC (7 years ago) by elliott
Adding test to confirm that pipe delimited files are read OK.

Revision 20486 - Directory Listing
Modified Tue Oct 26 00:28:23 2010 UTC (7 years ago) by elliott
Changing column name from  "Note for import into iCAT" to "Comments and discussions to be imported in iCAT"

Revision 20484 - Directory Listing
Modified Mon Oct 25 23:54:33 2010 UTC (7 years ago) by elliott
Upgrading both these files to correspond with the latest version from ST.

Revision 20460 - Directory Listing
Modified Mon Oct 25 15:32:26 2010 UTC (7 years ago) by elliott
Adding new Detailed Definition column and populated it with the longDefinition property from the ontology.

Revision 20455 - Directory Listing
Modified Fri Oct 22 23:25:50 2010 UTC (7 years ago) by elliott
adding first cut of export scripts functionality

Revision 20208 - Directory Listing
Modified Wed Sep 29 19:21:04 2010 UTC (7 years ago) by tudorache
copy also plugin.properties

Revision 20207 - Directory Listing
Modified Wed Sep 29 18:54:23 2010 UTC (7 years ago) by tudorache
added lucene as a dependency

Revision 20195 - Directory Listing
Modified Tue Sep 28 20:37:05 2010 UTC (7 years ago) by tudorache
fix for capturing the changes of the lbel of the title instance

Revision 20191 - Directory Listing
Modified Tue Sep 28 10:36:38 2010 UTC (7 years ago) by tudorache
added dependency to lucene

Revision 20190 - Directory Listing
Modified Tue Sep 28 10:25:08 2010 UTC (7 years ago) by tudorache
utils

Revision 20189 - Directory Listing
Modified Tue Sep 28 10:23:01 2010 UTC (7 years ago) by tudorache
added the project plugin

Revision 20188 - Directory Listing
Modified Tue Sep 28 10:22:46 2010 UTC (7 years ago) by tudorache
folders for the different utils to be used on the deploy servers to run the scripts

Revision 20187 - Directory Listing
Modified Tue Sep 28 10:22:06 2010 UTC (7 years ago) by tudorache
util for splitting defs in longs and shorts

Revision 20186 - Directory Listing
Modified Tue Sep 28 10:21:31 2010 UTC (7 years ago) by tudorache
util for moving synonyms to base index terms

Revision 20185 - Directory Listing
Modified Tue Sep 28 10:20:53 2010 UTC (7 years ago) by tudorache
project plugin for updating the lucene index when an icd category is renamed

Revision 20184 - Directory Listing
Modified Tue Sep 28 10:20:09 2010 UTC (7 years ago) by tudorache
added constants and methods for dealing with the index, and long definition

Revision 20183 - Directory Listing
Modified Tue Sep 28 10:19:22 2010 UTC (7 years ago) by tudorache
the split defs folder used to split definitions in long and short

Revision 20144 - Directory Listing
Modified Fri Sep 24 22:54:10 2010 UTC (7 years, 1 month ago) by elliott
ensuring it works with the value sets OK

Revision 20143 - Directory Listing
Modified Fri Sep 24 22:42:42 2010 UTC (7 years, 1 month ago) by elliott
removing linearizations

Revision 20132 - Directory Listing
Modified Fri Sep 24 06:10:45 2010 UTC (7 years, 1 month ago) by tudorache
typo

Revision 20131 - Directory Listing
Modified Fri Sep 24 06:09:43 2010 UTC (7 years, 1 month ago) by tudorache
fixed path to icd.jar

Revision 20129 - Directory Listing
Modified Fri Sep 24 06:07:44 2010 UTC (7 years, 1 month ago) by tudorache
fix lib

Revision 20122 - Directory Listing
Modified Thu Sep 23 22:57:11 2010 UTC (7 years, 1 month ago) by tudorache
moved

Revision 20121 - Directory Listing
Modified Thu Sep 23 22:56:49 2010 UTC (7 years, 1 month ago) by tudorache
jar + build script to import definitions in icat

Revision 20120 - Directory Listing
Modified Thu Sep 23 22:56:25 2010 UTC (7 years, 1 month ago) by tudorache
jar + build script to fix metaclasses

Revision 20119 - Directory Listing
Modified Thu Sep 23 22:55:55 2010 UTC (7 years, 1 month ago) by tudorache
moved jars to other places

Revision 20117 - Directory Listing
Modified Thu Sep 23 22:52:03 2010 UTC (7 years, 1 month ago) by tudorache
made the lib dir the bin

Revision 20116 - Directory Listing
Modified Thu Sep 23 22:51:20 2010 UTC (7 years, 1 month ago) by tudorache
jar to import defs

Revision 20115 - Directory Listing
Modified Thu Sep 23 22:49:05 2010 UTC (7 years, 1 month ago) by tudorache
fix metaclasses

Revision 20114 - Directory Listing
Modified Thu Sep 23 22:48:33 2010 UTC (7 years, 1 month ago) by tudorache
import defs in icd

Revision 20113 - Directory Listing
Modified Thu Sep 23 22:48:03 2010 UTC (7 years, 1 month ago) by tudorache
import definitions in icd

Revision 20109 - Directory Listing
Modified Thu Sep 23 21:55:59 2010 UTC (7 years, 1 month ago) by tudorache
remove @Override

Revision 20083 - Directory Listing
Modified Tue Sep 21 01:22:00 2010 UTC (7 years, 1 month ago) by elliott
Now correctly assigns the metaclasses for ICPS.

Revision 19821 - Directory Listing
Modified Fri Aug 20 23:31:15 2010 UTC (7 years, 2 months ago) by elliott
class creation now works with the latest version of the prototype.

Revision 19793 - Directory Listing
Modified Mon Aug 16 22:42:02 2010 UTC (7 years, 2 months ago) by elliott
committing patch redo

Revision 19792 - Directory Listing
Modified Mon Aug 16 22:32:43 2010 UTC (7 years, 2 months ago) by elliott
now properly creates the title terms on class creation

Revision 19791 - Directory Listing
Modified Mon Aug 16 22:01:19 2010 UTC (7 years, 2 months ago) by elliott
patch will now allow the creation of the correct metaclasses for the subclasses for ICPS

Revision 19775 - Directory Listing
Modified Fri Aug 13 23:33:40 2010 UTC (7 years, 2 months ago) by elliott
Updating file with version that works.

Revision 19774 - Directory Listing
Modified Fri Aug 13 22:39:35 2010 UTC (7 years, 2 months ago) by elliott
Adding the patch for the icd jar to support icps prototyping.

Revision 19674 - Directory Listing
Modified Fri Jul 30 22:22:06 2010 UTC (7 years, 2 months ago) by nyulas
Instructions for migrating content model before running the migration application for Chapter XX.

Revision 19673 - Directory Listing
Modified Fri Jul 30 22:16:00 2010 UTC (7 years, 2 months ago) by nyulas
Import Chapter XX implemented

Revision 19671 - Directory Listing
Modified Fri Jul 30 21:43:13 2010 UTC (7 years, 2 months ago) by nyulas
minor changes to use constants instead of inline String expressions

Revision 19643 - Directory Listing
Modified Wed Jul 28 21:41:13 2010 UTC (7 years, 2 months ago) by nyulas
Extracted some utility methods in the ImportUtils class to be reusable from other classes.

Revision 19627 - Directory Listing
Modified Tue Jul 27 01:18:31 2010 UTC (7 years, 3 months ago) by nyulas
Added a skeleton for the new import utility for Chapter XX.

Revision 19626 - Directory Listing
Modified Tue Jul 27 00:38:23 2010 UTC (7 years, 3 months ago) by tudorache
Renamed utility class to more meaningful name and updated jar file the and ANT build script.

Revision 19514 - Directory Listing
Modified Thu Jul 15 02:20:25 2010 UTC (7 years, 3 months ago) by tudorache
changed create new icd category: set morbidity - yes, mortality - no, biologicalSex -NA

Revision 19513 - Directory Listing
Modified Thu Jul 15 02:19:49 2010 UTC (7 years, 3 months ago) by tudorache
added biological sex

Revision 19512 - Directory Listing
Modified Thu Jul 15 01:13:28 2010 UTC (7 years, 3 months ago) by tudorache


Revision 19511 - Directory Listing
Modified Thu Jul 15 01:13:06 2010 UTC (7 years, 3 months ago) by tudorache
fix

Revision 19510 - Directory Listing
Modified Thu Jul 15 01:10:40 2010 UTC (7 years, 3 months ago) by tudorache
new version

Revision 19509 - Directory Listing
Modified Thu Jul 15 01:10:02 2010 UTC (7 years, 3 months ago) by tudorache
fix file name

Revision 19508 - Directory Listing
Modified Thu Jul 15 01:06:58 2010 UTC (7 years, 3 months ago) by tudorache
class name fix

Revision 19507 - Directory Listing
Modified Thu Jul 15 01:05:37 2010 UTC (7 years, 3 months ago) by tudorache
build file for fixing metaclasses


Revision 19506 - Directory Listing
Modified Thu Jul 15 01:04:09 2010 UTC (7 years, 3 months ago) by tudorache
fix metaclasses script

Revision 19505 - Directory Listing
Modified Thu Jul 15 01:03:56 2010 UTC (7 years, 3 months ago) by tudorache
folder for different jars

Revision 19504 - Directory Listing
Modified Thu Jul 15 01:00:22 2010 UTC (7 years, 3 months ago) by tudorache
moved under import_linearizations_from_xls

Revision 19503 - Directory Listing
Modified Thu Jul 15 00:36:51 2010 UTC (7 years, 3 months ago) by tudorache
Moved resources

Revision 19502 - Directory Listing
Modified Thu Jul 15 00:07:21 2010 UTC (7 years, 3 months ago) by tudorache
Renamed build directory to import_linearizations_from_xls

Revision 19501 - Directory Listing
Modified Wed Jul 14 23:49:32 2010 UTC (7 years, 3 months ago) by tudorache
Added import utility from Excel for biological sex and no mortality linearizations.

Revision 19500 - Directory Listing
Modified Wed Jul 14 23:48:01 2010 UTC (7 years, 3 months ago) by tudorache
Added import utility from Excel for biological sex and no mortality linearizations.

Revision 19385 - Directory Listing
Modified Wed Jul 7 04:54:44 2010 UTC (7 years, 3 months ago) by tudorache
important bug fix: when creating an external causes subclass, the parent class would have the metaclasses changed to the regular disease metaclasses.

Revision 18773 - Directory Listing
Modified Tue May 4 00:08:05 2010 UTC (7 years, 5 months ago) by tudorache
example for the sorting label

Revision 18772 - Directory Listing
Modified Tue May 4 00:07:53 2010 UTC (7 years, 5 months ago) by tudorache
added the sorting label and the lin sorting label

Revision 18460 - Directory Listing
Modified Sat Apr 17 00:52:04 2010 UTC (7 years, 6 months ago) by tudorache
added util method

Revision 18459 - Directory Listing
Modified Sat Apr 17 00:51:45 2010 UTC (7 years, 6 months ago) by tudorache
added linearization information

Revision 18429 - Directory Listing
Modified Fri Apr 16 04:04:37 2010 UTC (7 years, 6 months ago) by tudorache
test


Revision 18428 - Directory Listing
Modified Fri Apr 16 03:55:31 2010 UTC (7 years, 6 months ago) by tudorache
refacotred

Revision 18427 - Directory Listing
Modified Fri Apr 16 03:55:16 2010 UTC (7 years, 6 months ago) by tudorache
refacotred

Revision 18415 - Directory Listing
Modified Fri Apr 16 00:57:22 2010 UTC (7 years, 6 months ago) by tudorache
added methods and constants for linearization and external causes

Revision 18414 - Directory Listing
Modified Fri Apr 16 00:56:51 2010 UTC (7 years, 6 months ago) by tudorache
disambiguate a method

Revision 17865 - Directory Listing
Modified Tue Mar 16 18:34:39 2010 UTC (7 years, 7 months ago) by tudorache
added example for getting the claml references

Revision 17835 - Directory Listing
Modified Mon Mar 15 23:00:14 2010 UTC (7 years, 7 months ago) by tudorache
example how to get the rubric id

Revision 17754 - Directory Listing
Modified Wed Mar 10 05:00:44 2010 UTC (7 years, 7 months ago) by tudorache
more examples

Revision 17753 - Directory Listing
Modified Wed Mar 10 05:00:34 2010 UTC (7 years, 7 months ago) by tudorache
added more getters

Revision 17752 - Directory Listing
Modified Wed Mar 10 04:33:35 2010 UTC (7 years, 7 months ago) by tudorache
more examples

Revision 17751 - Directory Listing
Modified Wed Mar 10 04:33:24 2010 UTC (7 years, 7 months ago) by tudorache
added some more getters

Revision 17748 - Directory Listing
Modified Wed Mar 10 01:49:05 2010 UTC (7 years, 7 months ago) by tudorache
some examples

Revision 17747 - Directory Listing
Modified Wed Mar 10 01:48:55 2010 UTC (7 years, 7 months ago) by tudorache
more getters

Revision 17746 - Directory Listing
Modified Tue Mar 9 22:50:25 2010 UTC (7 years, 7 months ago) by tudorache
just a comment

Revision 17745 - Directory Listing
Modified Tue Mar 9 22:49:31 2010 UTC (7 years, 7 months ago) by tudorache
clean up the main

Revision 16339 - Directory Listing
Modified Tue Dec 15 20:23:44 2009 UTC (7 years, 10 months ago) by tudorache
import hierarchy

Revision 16338 - Directory Listing
Modified Tue Dec 15 20:23:15 2009 UTC (7 years, 10 months ago) by tudorache
minor

Revision 15572 - Directory Listing
Modified Tue Oct 6 13:13:31 2009 UTC (8 years ago) by tredmond
standard svn:ignores

Revision 15536 - Directory Listing
Modified Fri Sep 25 12:58:02 2009 UTC (8 years, 1 month ago) by tudorache
import IND

Revision 15535 - Directory Listing
Modified Fri Sep 25 12:57:47 2009 UTC (8 years, 1 month ago) by tudorache
added some more properties

Revision 15534 - Directory Listing
Modified Fri Sep 25 12:57:34 2009 UTC (8 years, 1 month ago) by tudorache
added some more properties

Revision 15533 - Directory Listing
Modified Fri Sep 25 09:22:43 2009 UTC (8 years, 1 month ago) by tudorache
create snomed annotations util

Revision 15532 - Directory Listing
Modified Fri Sep 25 09:22:22 2009 UTC (8 years, 1 month ago) by tudorache
added defintion terms

Revision 15531 - Directory Listing
Modified Fri Sep 25 09:22:09 2009 UTC (8 years, 1 month ago) by tudorache
added definition

Revision 15530 - Directory Listing
Modified Fri Sep 25 09:21:52 2009 UTC (8 years, 1 month ago) by tudorache
included definition

Revision 15462 - Directory Listing
Modified Sun Sep 20 08:24:07 2009 UTC (8 years, 1 month ago) by tudorache
utility for adding labels to snomed

Revision 15461 - Directory Listing
Modified Sun Sep 20 08:23:47 2009 UTC (8 years, 1 month ago) by tudorache
added some more constants

Revision 15460 - Directory Listing
Modified Sun Sep 20 08:23:21 2009 UTC (8 years, 1 month ago) by tudorache
added morbidity and some more getters

Revision 15459 - Directory Listing
Modified Sun Sep 20 00:45:00 2009 UTC (8 years, 1 month ago) by tredmond
trying refinements to password

Revision 15458 - Directory Listing
Modified Sun Sep 20 00:36:16 2009 UTC (8 years, 1 month ago) by tredmond
mail works

Revision 15457 - Directory Listing
Modified Sat Sep 19 22:36:01 2009 UTC (8 years, 1 month ago) by tredmond
transfer

Revision 15450 - Directory Listing
Modified Fri Sep 18 18:44:09 2009 UTC (8 years, 1 month ago) by tredmond
mail seems easy but ssl isn't working

Revision 15423 - Directory Listing
Modified Thu Sep 17 21:06:18 2009 UTC (8 years, 1 month ago) by tredmond
stagerest


Revision 15422 - Directory Listing
Modified Thu Sep 17 21:05:20 2009 UTC (8 years, 1 month ago) by tredmond
added rename of CausalMechanism to CausalFactor

Revision 15400 - Directory Listing
Modified Tue Sep 15 23:30:29 2009 UTC (8 years, 1 month ago) by tredmond
added some logging so I can see progress.

Revision 15399 - Directory Listing
Modified Tue Sep 15 23:30:04 2009 UTC (8 years, 1 month ago) by tredmond
added some logging so I can see progress.

Revision 15398 - Directory Listing
Modified Tue Sep 15 22:43:34 2009 UTC (8 years, 1 month ago) by tredmond
more parameterization

Revision 15397 - Directory Listing
Modified Tue Sep 15 22:43:18 2009 UTC (8 years, 1 month ago) by tredmond
Martin's extra column

Revision 15396 - Directory Listing
Modified Tue Sep 15 22:42:55 2009 UTC (8 years, 1 month ago) by tredmond
more parameterization

Revision 15393 - Directory Listing
Modified Tue Sep 15 17:57:28 2009 UTC (8 years, 1 month ago) by tredmond


Revision 15392 - Directory Listing
Modified Tue Sep 15 17:57:17 2009 UTC (8 years, 1 month ago) by tredmond
parameterized and tested

Revision 15389 - Directory Listing
Modified Tue Sep 15 16:25:22 2009 UTC (8 years, 1 month ago) by tredmond
added delay option

Revision 15388 - Directory Listing
Modified Tue Sep 15 16:24:59 2009 UTC (8 years, 1 month ago) by tredmond
mail libraries

Revision 15387 - Directory Listing
Modified Tue Sep 15 16:24:40 2009 UTC (8 years, 1 month ago) by tredmond
 a new runnable 

Revision 15386 - Directory Listing
Modified Tue Sep 15 16:24:13 2009 UTC (8 years, 1 month ago) by tredmond
save the ontology

Revision 15384 - Directory Listing
Modified Tue Sep 15 07:54:23 2009 UTC (8 years, 1 month ago) by tredmond
standard svn ignores

Revision 15383 - Directory Listing
Modified Tue Sep 15 07:53:19 2009 UTC (8 years, 1 month ago) by tredmond
the main routine for inserting labels based on term ids

Revision 15382 - Directory Listing
Modified Tue Sep 15 07:52:50 2009 UTC (8 years, 1 month ago) by tredmond
added the termid to label thing to local.properties

Revision 15380 - Directory Listing
Modified Tue Sep 15 05:42:26 2009 UTC (8 years, 1 month ago) by tredmond
an example local.properties file

Revision 15379 - Directory Listing
Modified Tue Sep 15 05:42:06 2009 UTC (8 years, 1 month ago) by tredmond
I made this because I was having trouble with the runnable.

Revision 15378 - Directory Listing
Modified Tue Sep 15 05:41:45 2009 UTC (8 years, 1 month ago) by tredmond
My next piece

Revision 15377 - Directory Listing
Modified Tue Sep 15 05:41:26 2009 UTC (8 years, 1 month ago) by tredmond
jdom is used by other classes

Revision 15376 - Directory Listing
Modified Tue Sep 15 05:40:58 2009 UTC (8 years, 1 month ago) by tredmond
The other one gave me trouble.

Revision 15375 - Directory Listing
Modified Tue Sep 15 05:40:43 2009 UTC (8 years, 1 month ago) by tredmond
Now it successfully splits the spreadsheet into two pieces.

Revision 15372 - Directory Listing
Modified Tue Sep 15 00:21:02 2009 UTC (8 years, 1 month ago) by tredmond
jexcel libraries for spreadsheets.

Revision 15371 - Directory Listing
Modified Tue Sep 15 00:20:45 2009 UTC (8 years, 1 month ago) by tredmond
First cut at the spreadsheet splitter.

Revision 15367 - Directory Listing
Modified Mon Sep 14 23:35:03 2009 UTC (8 years, 1 month ago) by tudorache
initial import

Revision 15366 - Directory Listing
Modified Mon Sep 14 22:59:43 2009 UTC (8 years, 1 month ago) by tudorache


Revision 15365 - Directory Listing
Modified Mon Sep 14 22:59:37 2009 UTC (8 years, 1 month ago) by tudorache


Revision 15364 - Directory Listing
Modified Mon Sep 14 22:59:30 2009 UTC (8 years, 1 month ago) by tudorache


Revision 15363 - Directory Listing
Added Mon Sep 14 22:59:17 2009 UTC (8 years, 1 month ago) by tudorache


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